Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC22.2■■□□□ 1.14
Trav6-3Q5R1E6 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC22.19■■□□□ 1.14
Trav6-3Q5R1E6 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Trav6-3Q5R1E6 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC22.14■■□□□ 1.13
Trav6-3Q5R1E6 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC22.12■■□□□ 1.13
Trav6-3Q5R1E6 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Trav6-3Q5R1E6 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
Trav6-3Q5R1E6 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Trav6-3Q5R1E6 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Trav6-3Q5R1E6 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Trav6-3Q5R1E6 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Trav6-3Q5R1E6 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Trav6-3Q5R1E6 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC21.94■■□□□ 1.1
Trav6-3Q5R1E6 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
Trav6-3Q5R1E6 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav6-3Q5R1E6 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav6-3Q5R1E6 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trav6-3Q5R1E6 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21.91■■□□□ 1.1
Trav6-3Q5R1E6 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC21.88■■□□□ 1.09
Trav6-3Q5R1E6 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trav6-3Q5R1E6 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC21.85■■□□□ 1.09
Trav6-3Q5R1E6 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trav6-3Q5R1E6 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trav6-3Q5R1E6 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Trav6-3Q5R1E6 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trav6-3Q5R1E6 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trav6-3Q5R1E6 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC21.76■■□□□ 1.07
Trav6-3Q5R1E6 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Trav6-3Q5R1E6 Zfp131-207ENSMUST00000224946 1783 ntBASIC21.72■■□□□ 1.07
Trav6-3Q5R1E6 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trav6-3Q5R1E6 Rab21-202ENSMUST00000218831 843 ntBASIC21.68■■□□□ 1.06
Trav6-3Q5R1E6 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Trav6-3Q5R1E6 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trav6-3Q5R1E6 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trav6-3Q5R1E6 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trav6-3Q5R1E6 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Trav6-3Q5R1E6 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trav6-3Q5R1E6 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trav6-3Q5R1E6 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trav6-3Q5R1E6 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Trav6-3Q5R1E6 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trav6-3Q5R1E6 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC21.54■■□□□ 1.04
Trav6-3Q5R1E6 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC21.53■■□□□ 1.04
Trav6-3Q5R1E6 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC21.52■■□□□ 1.04
Trav6-3Q5R1E6 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC21.52■■□□□ 1.04
Trav6-3Q5R1E6 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Trav6-3Q5R1E6 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
Trav6-3Q5R1E6 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Trav6-3Q5R1E6 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trav6-3Q5R1E6 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Trav6-3Q5R1E6 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Trav6-3Q5R1E6 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trav6-3Q5R1E6 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Trav6-3Q5R1E6 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trav6-3Q5R1E6 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Trav6-3Q5R1E6 Gm2415-204ENSMUST00000190235 2004 ntBASIC21.45■■□□□ 1.02
Trav6-3Q5R1E6 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Trav6-3Q5R1E6 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Trav6-3Q5R1E6 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Trav6-3Q5R1E6 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Trav6-3Q5R1E6 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
Trav6-3Q5R1E6 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trav6-3Q5R1E6 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Trav6-3Q5R1E6 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trav6-3Q5R1E6 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trav6-3Q5R1E6 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trav6-3Q5R1E6 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Trav6-3Q5R1E6 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Trav6-3Q5R1E6 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC21.32■■□□□ 1
Trav6-3Q5R1E6 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trav6-3Q5R1E6 Gm6658-202ENSMUST00000209493 1885 ntBASIC21.31■■□□□ 1
Trav6-3Q5R1E6 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Trav6-3Q5R1E6 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
Trav6-3Q5R1E6 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC21.25■□□□□ 0.99
Trav6-3Q5R1E6 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trav6-3Q5R1E6 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.23■□□□□ 0.99
Trav6-3Q5R1E6 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trav6-3Q5R1E6 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trav6-3Q5R1E6 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Trav6-3Q5R1E6 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav6-3Q5R1E6 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav6-3Q5R1E6 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav6-3Q5R1E6 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trav6-3Q5R1E6 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trav6-3Q5R1E6 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav6-3Q5R1E6 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Trav6-3Q5R1E6 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav6-3Q5R1E6 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav6-3Q5R1E6 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trav6-3Q5R1E6 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trav6-3Q5R1E6 AL845457.1-201ENSMUST00000197244 68 ntBASIC21.12■□□□□ 0.97
Trav6-3Q5R1E6 AC153504.1-201ENSMUST00000218379 2290 ntBASIC21.11■□□□□ 0.97
Trav6-3Q5R1E6 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.08■□□□□ 0.97
Trav6-3Q5R1E6 Mipep-204ENSMUST00000225043 1548 ntBASIC21.07■□□□□ 0.96
Trav6-3Q5R1E6 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trav6-3Q5R1E6 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trav6-3Q5R1E6 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trav6-3Q5R1E6 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trav6-3Q5R1E6 Gm25262-201ENSMUST00000174934 133 ntBASIC21.01■□□□□ 0.95
Trav6-3Q5R1E6 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms