Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC32.24■■■□□ 2.75
CLCN3P51790 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
CLCN3P51790 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CLCN3P51790 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC32.18■■■□□ 2.74
CLCN3P51790 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC32.16■■■□□ 2.74
CLCN3P51790 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
CLCN3P51790 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
CLCN3P51790 AL031258.1-201ENST00000623562 325 ntBASIC32.1■■■□□ 2.73
CLCN3P51790 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC32.08■■■□□ 2.73
CLCN3P51790 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CLCN3P51790 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC32.01■■■□□ 2.71
CLCN3P51790 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CLCN3P51790 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.97■■■□□ 2.71
CLCN3P51790 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.97■■■□□ 2.71
CLCN3P51790 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC31.96■■■□□ 2.71
CLCN3P51790 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CLCN3P51790 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.92■■■□□ 2.7
CLCN3P51790 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
CLCN3P51790 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.87■■■□□ 2.69
CLCN3P51790 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
CLCN3P51790 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.85■■■□□ 2.69
CLCN3P51790 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.85■■■□□ 2.69
CLCN3P51790 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.85■■■□□ 2.69
CLCN3P51790 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC31.83■■■□□ 2.69
CLCN3P51790 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CLCN3P51790 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.68
CLCN3P51790 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC31.8■■■□□ 2.68
CLCN3P51790 AC145285.7-201ENST00000614819 1539 ntBASIC31.79■■■□□ 2.68
CLCN3P51790 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CLCN3P51790 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
CLCN3P51790 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
CLCN3P51790 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
CLCN3P51790 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CLCN3P51790 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CLCN3P51790 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC31.72■■■□□ 2.67
CLCN3P51790 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC31.71■■■□□ 2.67
CLCN3P51790 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.67■■■□□ 2.66
CLCN3P51790 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.63■■■□□ 2.65
CLCN3P51790 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.61■■■□□ 2.65
CLCN3P51790 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.61■■■□□ 2.65
CLCN3P51790 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.61■■■□□ 2.65
CLCN3P51790 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC31.58■■■□□ 2.65
CLCN3P51790 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
CLCN3P51790 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.56■■■□□ 2.64
CLCN3P51790 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CLCN3P51790 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
CLCN3P51790 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
CLCN3P51790 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.51■■■□□ 2.63
CLCN3P51790 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
CLCN3P51790 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC31.5■■■□□ 2.63
CLCN3P51790 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
CLCN3P51790 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.48■■■□□ 2.63
CLCN3P51790 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC31.48■■■□□ 2.63
CLCN3P51790 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.46■■■□□ 2.63
CLCN3P51790 RARRES2P7-201ENST00000567349 469 ntBASIC31.45■■■□□ 2.63
CLCN3P51790 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CLCN3P51790 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
CLCN3P51790 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.4■■■□□ 2.62
CLCN3P51790 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
CLCN3P51790 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.37■■■□□ 2.61
CLCN3P51790 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC31.36■■■□□ 2.61
CLCN3P51790 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC31.36■■■□□ 2.61
CLCN3P51790 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CLCN3P51790 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.35■■■□□ 2.61
CLCN3P51790 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.34■■■□□ 2.61
CLCN3P51790 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.32■■■□□ 2.6
CLCN3P51790 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC31.32■■■□□ 2.6
CLCN3P51790 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CLCN3P51790 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
CLCN3P51790 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
CLCN3P51790 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.31■■■□□ 2.6
CLCN3P51790 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC31.31■■■□□ 2.6
CLCN3P51790 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CLCN3P51790 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC31.29■■■□□ 2.6
CLCN3P51790 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC31.29■■■□□ 2.6
CLCN3P51790 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.28■■■□□ 2.6
CLCN3P51790 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC31.24■■■□□ 2.59
CLCN3P51790 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CLCN3P51790 SETD8P1-201ENST00000623146 1180 ntBASIC31.22■■■□□ 2.59
CLCN3P51790 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CLCN3P51790 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CLCN3P51790 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.21■■■□□ 2.59
CLCN3P51790 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
CLCN3P51790 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CLCN3P51790 AC097358.2-201ENST00000607541 1159 ntBASIC31.15■■■□□ 2.58
CLCN3P51790 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC31.14■■■□□ 2.58
CLCN3P51790 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CLCN3P51790 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CLCN3P51790 AC136428.2-201ENST00000563187 214 ntBASIC31.12■■■□□ 2.57
CLCN3P51790 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
CLCN3P51790 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.11■■■□□ 2.57
CLCN3P51790 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC31.08■■■□□ 2.57
CLCN3P51790 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
CLCN3P51790 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC31.05■■■□□ 2.56
CLCN3P51790 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CLCN3P51790 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CLCN3P51790 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.02■■■□□ 2.56
CLCN3P51790 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
CLCN3P51790 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.01■■■□□ 2.55
CLCN3P51790 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms