Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC32.2■■■□□ 2.74
CHRNA1P02708 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CHRNA1P02708 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC32.17■■■□□ 2.74
CHRNA1P02708 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
CHRNA1P02708 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC32.1■■■□□ 2.73
CHRNA1P02708 ILK-212ENST00000532063 1617 ntTSL 2 BASIC32.08■■■□□ 2.73
CHRNA1P02708 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC32.06■■■□□ 2.72
CHRNA1P02708 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC32.05■■■□□ 2.72
CHRNA1P02708 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC32.05■■■□□ 2.72
CHRNA1P02708 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC32.02■■■□□ 2.72
CHRNA1P02708 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC32.01■■■□□ 2.72
CHRNA1P02708 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CHRNA1P02708 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CHRNA1P02708 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CHRNA1P02708 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
CHRNA1P02708 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
CHRNA1P02708 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.91■■■□□ 2.7
CHRNA1P02708 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.89■■■□□ 2.7
CHRNA1P02708 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.89■■■□□ 2.7
CHRNA1P02708 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.84■■■□□ 2.69
CHRNA1P02708 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.83■■■□□ 2.69
CHRNA1P02708 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CHRNA1P02708 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.82■■■□□ 2.68
CHRNA1P02708 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
CHRNA1P02708 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CHRNA1P02708 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC31.78■■■□□ 2.68
CHRNA1P02708 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC31.76■■■□□ 2.67
CHRNA1P02708 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
CHRNA1P02708 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.74■■■□□ 2.67
CHRNA1P02708 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.73■■■□□ 2.67
CHRNA1P02708 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC31.71■■■□□ 2.67
CHRNA1P02708 RARRES2P7-201ENST00000567349 469 ntBASIC31.71■■■□□ 2.67
CHRNA1P02708 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC31.7■■■□□ 2.67
CHRNA1P02708 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.7■■■□□ 2.67
CHRNA1P02708 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC31.67■■■□□ 2.66
CHRNA1P02708 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
CHRNA1P02708 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CHRNA1P02708 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC31.59■■■□□ 2.65
CHRNA1P02708 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CHRNA1P02708 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC31.57■■■□□ 2.64
CHRNA1P02708 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.55■■■□□ 2.64
CHRNA1P02708 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CHRNA1P02708 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CHRNA1P02708 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.52■■■□□ 2.64
CHRNA1P02708 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CHRNA1P02708 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.51■■■□□ 2.63
CHRNA1P02708 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.5■■■□□ 2.63
CHRNA1P02708 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC31.49■■■□□ 2.63
CHRNA1P02708 AC097358.2-201ENST00000607541 1159 ntBASIC31.48■■■□□ 2.63
CHRNA1P02708 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
CHRNA1P02708 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.47■■■□□ 2.63
CHRNA1P02708 SETD8P1-201ENST00000623146 1180 ntBASIC31.45■■■□□ 2.63
CHRNA1P02708 AC136428.2-201ENST00000563187 214 ntBASIC31.44■■■□□ 2.62
CHRNA1P02708 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.43■■■□□ 2.62
CHRNA1P02708 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CHRNA1P02708 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.43■■■□□ 2.62
CHRNA1P02708 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC31.42■■■□□ 2.62
CHRNA1P02708 AC145285.7-201ENST00000614819 1539 ntBASIC31.42■■■□□ 2.62
CHRNA1P02708 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC31.39■■■□□ 2.62
CHRNA1P02708 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.39■■■□□ 2.62
CHRNA1P02708 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
CHRNA1P02708 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.32■■■□□ 2.6
CHRNA1P02708 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
CHRNA1P02708 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CHRNA1P02708 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.26■■■□□ 2.59
CHRNA1P02708 SUZ12P1-203ENST00000578195 985 ntBASIC31.26■■■□□ 2.59
CHRNA1P02708 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.25■■■□□ 2.59
CHRNA1P02708 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC31.24■■■□□ 2.59
CHRNA1P02708 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
CHRNA1P02708 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.2■■■□□ 2.59
CHRNA1P02708 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.2■■■□□ 2.59
CHRNA1P02708 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CHRNA1P02708 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CHRNA1P02708 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.18■■■□□ 2.58
CHRNA1P02708 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CHRNA1P02708 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
CHRNA1P02708 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.12■■■□□ 2.57
CHRNA1P02708 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CHRNA1P02708 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
CHRNA1P02708 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CHRNA1P02708 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC31.08■■■□□ 2.57
CHRNA1P02708 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
CHRNA1P02708 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.06■■■□□ 2.56
CHRNA1P02708 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CHRNA1P02708 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CHRNA1P02708 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CHRNA1P02708 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CHRNA1P02708 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.56
CHRNA1P02708 CAHM-201ENST00000604200 896 ntBASIC31.01■■■□□ 2.55
CHRNA1P02708 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
CHRNA1P02708 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
CHRNA1P02708 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CHRNA1P02708 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.98■■■□□ 2.55
CHRNA1P02708 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.96■■■□□ 2.55
CHRNA1P02708 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.96■■■□□ 2.55
CHRNA1P02708 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CHRNA1P02708 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CHRNA1P02708 RPS2P35-201ENST00000443417 897 ntBASIC30.95■■■□□ 2.55
CHRNA1P02708 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
CHRNA1P02708 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.9■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms