Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.341e-68■■■■■ 93.1
SMNDC1O75940 SYCP2L-202ENST00000341041 3069 ntTSL 211.62□□□□□ -0.551e-68■■■■■ 93.1
SMNDC1O75940 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC22.01■■□□□ 1.114e-26■■■■■ 93
SMNDC1O75940 snoU2-30.2-201ENST00000362805 70 ntBASIC3.23□□□□□ -1.892e-46■■■■■ 92.7
SMNDC1O75940 SGPL1-204ENST00000486993 537 ntTSL 1 (best)18.56■□□□□ 0.565e-8■■■■■ 91
SMNDC1O75940 SGPL1-202ENST00000373202 5745 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.595e-8■■■■■ 91
SMNDC1O75940 RNU2-41P-201ENST00000410991 178 ntBASIC7.16□□□□□ -1.262e-23■■■■■ 86.7
SMNDC1O75940 RNU6-271P-201ENST00000363858 105 ntBASIC3.58□□□□□ -1.842e-12■■■■■ 83.9
SMNDC1O75940 PTPRT-210ENST00000617474 4521 ntTSL 515.97■□□□□ 0.154e-23■■■■■ 82.8
SMNDC1O75940 PTPRT-205ENST00000373193 12681 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.844e-23■■■■■ 82.8
SMNDC1O75940 PTPRT-206ENST00000373198 12746 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.94e-23■■■■■ 82.8
SMNDC1O75940 PTPRT-207ENST00000373201 12660 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.914e-23■■■■■ 82.8
SMNDC1O75940 PTPRT-204ENST00000373190 12559 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.954e-23■■■■■ 82.8
SMNDC1O75940 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.454e-23■■■■■ 82.8
SMNDC1O75940 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.454e-23■■■■■ 82.8
SMNDC1O75940 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.454e-23■■■■■ 82.8
SMNDC1O75940 NCAPD2-208ENST00000539714 533 ntTSL 37.03□□□□□ -1.289e-64■■■■■ 82.8
SMNDC1O75940 NCAPD2-210ENST00000541399 584 ntTSL 56.32□□□□□ -1.49e-64■■■■■ 82.8
SMNDC1O75940 SCARNA10-201ENST00000459255 330 ntBASIC4.88□□□□□ -1.639e-64■■■■■ 82.8
SMNDC1O75940 SNORD3B-1-201ENST00000577988 758 ntBASIC12.37□□□□□ -0.435e-24■■■■■ 82
SMNDC1O75940 SNORD3B-1-203ENST00000631292 217 nt9.8□□□□□ -0.845e-24■■■■■ 82
SMNDC1O75940 SNORD3B-1-202ENST00000617128 218 nt9.76□□□□□ -0.855e-24■■■■■ 82
SMNDC1O75940 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC13.82□□□□□ -0.23e-14■■■■■ 81.9
SMNDC1O75940 EIF1AX-202ENST00000379607 4427 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.83e-14■■■■■ 81.9
SMNDC1O75940 PUM1-202ENST00000373741 4242 ntTSL 1 (best) BASIC12.16□□□□□ -0.461e-63■■■■■ 81.3
SMNDC1O75940 PUM1-201ENST00000257075 5360 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.731e-63■■■■■ 81.3
SMNDC1O75940 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC8.87□□□□□ -0.991e-63■■■■■ 81.3
SMNDC1O75940 PUM1-203ENST00000373742 3515 ntTSL 2 BASIC8.68□□□□□ -1.021e-63■■■■■ 81.3
SMNDC1O75940 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC7.82□□□□□ -1.161e-63■■■■■ 81.3
SMNDC1O75940 PUM1-214ENST00000525843 4528 ntTSL 57.55□□□□□ -1.21e-63■■■■■ 81.3
SMNDC1O75940 PUM1-211ENST00000498419 3068 ntTSL 56.83□□□□□ -1.321e-63■■■■■ 81.3
SMNDC1O75940 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.51□□□□□ -1.371e-63■■■■■ 81.3
SMNDC1O75940 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.411e-63■■■■■ 81.3
SMNDC1O75940 RNU6-378P-201ENST00000384324 107 ntBASIC4.67□□□□□ -1.663e-12■■■■■ 81.1
SMNDC1O75940 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.341e-36■■■■■ 77.7
SMNDC1O75940 NCAPD2-202ENST00000382457 2844 ntTSL 511.77□□□□□ -0.531e-36■■■■■ 77.7
SMNDC1O75940 NCAPD2-207ENST00000539084 4290 ntTSL 210.32□□□□□ -0.761e-36■■■■■ 77.7
SMNDC1O75940 MED24-231ENST00000584782 542 ntTSL 38.52□□□□□ -1.054e-33■■■■■ 75.8
SMNDC1O75940 MED24-228ENST00000581058 524 ntTSL 48.43□□□□□ -1.064e-33■■■■■ 75.8
SMNDC1O75940 SNORD124-201ENST00000459577 104 ntBASIC1.45□□□□□ -2.184e-33■■■■■ 75.8
SMNDC1O75940 RNU6-13P-201ENST00000384248 107 ntBASIC3.25□□□□□ -1.891e-69■■■■■ 75.6
SMNDC1O75940 SCARNA2-201ENST00000458748 420 ntBASIC15.75■□□□□ 0.111e-323■■■■■ 75.3
SMNDC1O75940 AL356488.2-201ENST00000602755 427 ntBASIC15.47■□□□□ 0.071e-323■■■■■ 75.3
SMNDC1O75940 RNU2-51P-201ENST00000410708 197 ntBASIC4.26□□□□□ -1.739e-22■■■■■ 74.5
SMNDC1O75940 RNU6-1141P-201ENST00000364520 107 ntBASIC4.23□□□□□ -1.731e-16■■■■■ 72.1
SMNDC1O75940 SCARNA9-201ENST00000530422 353 ntBASIC8.64□□□□□ -1.034e-61■■■■■ 72
SMNDC1O75940 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.534e-61■■■■■ 72
SMNDC1O75940 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.48□□□□□ -1.694e-61■■■■■ 72
SMNDC1O75940 CEP295-203ENST00000530425 1735 ntAPPRIS ALT2 TSL 44.42□□□□□ -1.74e-61■■■■■ 72
SMNDC1O75940 RNF149-202ENST00000424632 2010 ntTSL 220.12■□□□□ 0.818e-33■■■■■ 71.7
SMNDC1O75940 SNORD89-201ENST00000390981 114 ntBASIC1.53□□□□□ -2.168e-33■■■■■ 71.7
SMNDC1O75940 DANCR-203ENST00000441504 336 ntTSL 215.83■□□□□ 0.124e-59■■■■■ 71.2
SMNDC1O75940 MED24-225ENST00000580885 1963 ntTSL 518.15■□□□□ 0.54e-33■■■■■ 70.4
SMNDC1O75940 MED24-213ENST00000535071 2441 ntTSL 517.15■□□□□ 0.344e-33■■■■■ 70.4
SMNDC1O75940 MED24-204ENST00000394128 3479 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.174e-33■■■■■ 70.4
SMNDC1O75940 MED24-214ENST00000535508 3334 ntTSL 213.89□□□□□ -0.194e-33■■■■■ 70.4
SMNDC1O75940 MED24-201ENST00000356271 3446 ntTSL 2 BASIC13.31□□□□□ -0.284e-33■■■■■ 70.4
SMNDC1O75940 MED24-203ENST00000394127 3456 ntTSL 2 BASIC12.96□□□□□ -0.344e-33■■■■■ 70.4
SMNDC1O75940 MED24-212ENST00000501516 3037 ntTSL 5 BASIC12.81□□□□□ -0.364e-33■■■■■ 70.4
SMNDC1O75940 MED24-202ENST00000394126 3896 ntTSL 1 (best) BASIC11.76□□□□□ -0.534e-33■■■■■ 70.4
SMNDC1O75940 MED24-219ENST00000578901 728 ntTSL 1 (best)7.43□□□□□ -1.224e-33■■■■■ 70.4
SMNDC1O75940 MED24-234ENST00000614384 454 ntTSL 1 (best) BASIC7.34□□□□□ -1.234e-33■■■■■ 70.4
SMNDC1O75940 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.67□□□□□ -1.661e-38■■■■■ 70.2
SMNDC1O75940 AC006064.5-201ENST00000541782 248 ntBASIC3.86□□□□□ -1.792e-77■■■■■ 68.8
SMNDC1O75940 SMC4-221ENST00000489573 1553 ntTSL 1 (best)19.6■□□□□ 0.732e-16■■■■■ 67.6
SMNDC1O75940 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.582e-16■■■■■ 67.6
SMNDC1O75940 SMC4-209ENST00000468653 1756 ntTSL 217.46■□□□□ 0.392e-16■■■■■ 67.6
SMNDC1O75940 SMC4-211ENST00000469858 1971 ntTSL 216.81■□□□□ 0.282e-16■■■■■ 67.6
SMNDC1O75940 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.35■□□□□ 0.212e-16■■■■■ 67.6
SMNDC1O75940 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.292e-16■■■■■ 67.6
SMNDC1O75940 SMC4-210ENST00000469762 3998 ntTSL 2 BASIC10.97□□□□□ -0.652e-16■■■■■ 67.6
SMNDC1O75940 SMC4-219ENST00000487747 637 ntTSL 58.95□□□□□ -0.982e-16■■■■■ 67.6
SMNDC1O75940 SMC4-227ENST00000497984 563 ntTSL 58.55□□□□□ -1.042e-16■■■■■ 67.6
SMNDC1O75940 SMC4-214ENST00000472991 582 ntTSL 58.33□□□□□ -1.082e-16■■■■■ 67.6
SMNDC1O75940 SMC4-213ENST00000472282 667 ntTSL 38.32□□□□□ -1.082e-16■■■■■ 67.6
SMNDC1O75940 SMC4-212ENST00000470240 724 ntTSL 38.04□□□□□ -1.122e-16■■■■■ 67.6
SMNDC1O75940 SMC4-208ENST00000467468 566 ntTSL 47.14□□□□□ -1.272e-16■■■■■ 67.6
SMNDC1O75940 MIR15B-201ENST00000385045 98 ntBASIC3.82□□□□□ -1.82e-16■■■■■ 67.6
SMNDC1O75940 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.72■□□□□ 0.438e-27■■■■■ 67.3
SMNDC1O75940 RUVBL1-203ENST00000472125 913 ntTSL 39.63□□□□□ -0.878e-27■■■■■ 67.3
SMNDC1O75940 RUVBL1-208ENST00000585057 1113 ntTSL 39.51□□□□□ -0.898e-27■■■■■ 67.3
SMNDC1O75940 RNU2-37P-201ENST00000410695 177 ntBASIC3.7□□□□□ -1.828e-27■■■■■ 67.3
SMNDC1O75940 TIPIN-203ENST00000562124 1009 ntAPPRIS ALT2 TSL 514.26□□□□□ -0.139e-51■■■■■ 67.1
SMNDC1O75940 TIPIN-201ENST00000261881 1744 ntAPPRIS P2 TSL 1 (best) BASIC10.54□□□□□ -0.729e-51■■■■■ 67.1
SMNDC1O75940 TIPIN-204ENST00000566524 1459 ntTSL 28.87□□□□□ -0.999e-51■■■■■ 67.1
SMNDC1O75940 SCARNA14-201ENST00000516903 136 ntBASIC3.36□□□□□ -1.879e-51■■■■■ 67.1
SMNDC1O75940 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC15.67■□□□□ 0.11e-18■■■■■ 66.9
SMNDC1O75940 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.43■□□□□ 0.061e-18■■■■■ 66.9
SMNDC1O75940 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC14.47□□□□□ -0.091e-18■■■■■ 66.9
SMNDC1O75940 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.77□□□□□ -0.211e-18■■■■■ 66.9
SMNDC1O75940 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.63□□□□□ -0.231e-18■■■■■ 66.9
SMNDC1O75940 PRKN-207ENST00000479615 904 ntTSL 513.54□□□□□ -0.241e-18■■■■■ 66.9
SMNDC1O75940 PRKN-206ENST00000366898 4180 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.421e-18■■■■■ 66.9
SMNDC1O75940 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.42■□□□□ 0.541e-28■■■■■ 66.5
SMNDC1O75940 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.061e-28■■■■■ 66.5
SMNDC1O75940 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC11.12□□□□□ -0.631e-28■■■■■ 66.5
SMNDC1O75940 KDELR2-203ENST00000454368 2478 ntTSL 210.05□□□□□ -0.81e-28■■■■■ 66.5
SMNDC1O75940 KDELR2-205ENST00000463747 376 ntTSL 59.59□□□□□ -0.871e-28■■■■■ 66.5
SMNDC1O75940 KDELR2-202ENST00000382267 583 ntTSL 48.81□□□□□ -11e-28■■■■■ 66.5
SMNDC1O75940 KIF2C-205ENST00000455186 908 ntTSL 59.51□□□□□ -0.891e-13■■■■■ 63.4
Retrieved 100 of 11,362 protein–RNA pairs in 115.2 ms