Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trbv3A0A0A6YYE2 Gm23366-201ENSMUST00000175022 89 ntBASIC21.25■□□□□ 0.99
Trbv3A0A0A6YYE2 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trbv3A0A0A6YYE2 AC153911.1-202ENSMUST00000218534 1034 ntBASIC21.2■□□□□ 0.98
Trbv3A0A0A6YYE2 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trbv3A0A0A6YYE2 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Trbv3A0A0A6YYE2 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trbv3A0A0A6YYE2 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Trbv3A0A0A6YYE2 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trbv3A0A0A6YYE2 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trbv3A0A0A6YYE2 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trbv3A0A0A6YYE2 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trbv3A0A0A6YYE2 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trbv3A0A0A6YYE2 AC153504.1-201ENSMUST00000218379 2290 ntBASIC20.99■□□□□ 0.95
Trbv3A0A0A6YYE2 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Trbv3A0A0A6YYE2 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
Trbv3A0A0A6YYE2 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trbv3A0A0A6YYE2 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trbv3A0A0A6YYE2 Gm2415-204ENSMUST00000190235 2004 ntBASIC20.88■□□□□ 0.93
Trbv3A0A0A6YYE2 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trbv3A0A0A6YYE2 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC20.88■□□□□ 0.93
Trbv3A0A0A6YYE2 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC20.86■□□□□ 0.93
Trbv3A0A0A6YYE2 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trbv3A0A0A6YYE2 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trbv3A0A0A6YYE2 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
Trbv3A0A0A6YYE2 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trbv3A0A0A6YYE2 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Trbv3A0A0A6YYE2 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC20.79■□□□□ 0.92
Trbv3A0A0A6YYE2 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trbv3A0A0A6YYE2 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trbv3A0A0A6YYE2 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trbv3A0A0A6YYE2 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trbv3A0A0A6YYE2 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trbv3A0A0A6YYE2 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trbv3A0A0A6YYE2 Gm6658-202ENSMUST00000209493 1885 ntBASIC20.68■□□□□ 0.9
Trbv3A0A0A6YYE2 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trbv3A0A0A6YYE2 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Trbv3A0A0A6YYE2 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trbv3A0A0A6YYE2 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trbv3A0A0A6YYE2 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Trbv3A0A0A6YYE2 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Trbv3A0A0A6YYE2 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trbv3A0A0A6YYE2 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trbv3A0A0A6YYE2 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC20.59■□□□□ 0.89
Trbv3A0A0A6YYE2 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trbv3A0A0A6YYE2 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trbv3A0A0A6YYE2 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Trbv3A0A0A6YYE2 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Trbv3A0A0A6YYE2 Gm9905-201ENSMUST00000065740 1845 ntBASIC20.51■□□□□ 0.87
Trbv3A0A0A6YYE2 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trbv3A0A0A6YYE2 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Trbv3A0A0A6YYE2 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trbv3A0A0A6YYE2 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trbv3A0A0A6YYE2 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trbv3A0A0A6YYE2 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Trbv3A0A0A6YYE2 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Trbv3A0A0A6YYE2 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trbv3A0A0A6YYE2 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trbv3A0A0A6YYE2 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trbv3A0A0A6YYE2 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Trbv3A0A0A6YYE2 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trbv3A0A0A6YYE2 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trbv3A0A0A6YYE2 Gm27325-201ENSMUST00000175467 74 ntBASIC20.43■□□□□ 0.86
Trbv3A0A0A6YYE2 Zfp131-207ENSMUST00000224946 1783 ntBASIC20.43■□□□□ 0.86
Trbv3A0A0A6YYE2 Zxda-201ENSMUST00000117281 2621 ntBASIC20.41■□□□□ 0.86
Trbv3A0A0A6YYE2 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Trbv3A0A0A6YYE2 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Trbv3A0A0A6YYE2 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
Trbv3A0A0A6YYE2 Gm6206-201ENSMUST00000133472 2199 ntBASIC20.39■□□□□ 0.85
Trbv3A0A0A6YYE2 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Trbv3A0A0A6YYE2 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trbv3A0A0A6YYE2 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trbv3A0A0A6YYE2 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trbv3A0A0A6YYE2 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC20.36■□□□□ 0.85
Trbv3A0A0A6YYE2 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Trbv3A0A0A6YYE2 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trbv3A0A0A6YYE2 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Trbv3A0A0A6YYE2 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trbv3A0A0A6YYE2 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trbv3A0A0A6YYE2 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trbv3A0A0A6YYE2 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trbv3A0A0A6YYE2 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC20.29■□□□□ 0.84
Trbv3A0A0A6YYE2 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trbv3A0A0A6YYE2 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trbv3A0A0A6YYE2 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trbv3A0A0A6YYE2 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trbv3A0A0A6YYE2 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Trbv3A0A0A6YYE2 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC20.24■□□□□ 0.83
Trbv3A0A0A6YYE2 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trbv3A0A0A6YYE2 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trbv3A0A0A6YYE2 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trbv3A0A0A6YYE2 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trbv3A0A0A6YYE2 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trbv3A0A0A6YYE2 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trbv3A0A0A6YYE2 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trbv3A0A0A6YYE2 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trbv3A0A0A6YYE2 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC20.16■□□□□ 0.82
Trbv3A0A0A6YYE2 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trbv3A0A0A6YYE2 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Trbv3A0A0A6YYE2 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 8.6 ms