Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC28.24■■■□□ 2.11
DDX4Q9NQI0 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC28.24■■■□□ 2.11
DDX4Q9NQI0 GAK-223ENST00000628912 497 ntTSL 5 BASIC28.24■■■□□ 2.11
DDX4Q9NQI0 AC011551.1-201ENST00000614101 683 ntBASIC28.23■■■□□ 2.11
DDX4Q9NQI0 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
DDX4Q9NQI0 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC28.23■■■□□ 2.11
DDX4Q9NQI0 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC28.22■■■□□ 2.11
DDX4Q9NQI0 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
DDX4Q9NQI0 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC28.22■■■□□ 2.11
DDX4Q9NQI0 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC28.22■■■□□ 2.11
DDX4Q9NQI0 SENP5-202ENST00000419026 973 ntTSL 3 BASIC28.22■■■□□ 2.11
DDX4Q9NQI0 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
DDX4Q9NQI0 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
DDX4Q9NQI0 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
DDX4Q9NQI0 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
DDX4Q9NQI0 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC28.2■■■□□ 2.11
DDX4Q9NQI0 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC28.2■■■□□ 2.11
DDX4Q9NQI0 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
DDX4Q9NQI0 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC28.2■■■□□ 2.1
DDX4Q9NQI0 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
DDX4Q9NQI0 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
DDX4Q9NQI0 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
DDX4Q9NQI0 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.1
DDX4Q9NQI0 FOXO3B-201ENST00000395675 1928 ntBASIC28.2■■■□□ 2.1
DDX4Q9NQI0 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
DDX4Q9NQI0 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
DDX4Q9NQI0 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC28.19■■■□□ 2.1
DDX4Q9NQI0 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC28.19■■■□□ 2.1
DDX4Q9NQI0 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
DDX4Q9NQI0 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
DDX4Q9NQI0 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC28.18■■■□□ 2.1
DDX4Q9NQI0 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC28.18■■■□□ 2.1
DDX4Q9NQI0 AC008406.3-201ENST00000620001 1374 ntBASIC28.17■■■□□ 2.1
DDX4Q9NQI0 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC28.17■■■□□ 2.1
DDX4Q9NQI0 LSM7-203ENST00000585409 512 ntTSL 2 BASIC28.17■■■□□ 2.1
DDX4Q9NQI0 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
DDX4Q9NQI0 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
DDX4Q9NQI0 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC28.16■■■□□ 2.1
DDX4Q9NQI0 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
DDX4Q9NQI0 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
DDX4Q9NQI0 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
DDX4Q9NQI0 AF131216.4-201ENST00000638924 1588 ntBASIC28.15■■■□□ 2.1
DDX4Q9NQI0 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
DDX4Q9NQI0 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC28.14■■■□□ 2.1
DDX4Q9NQI0 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
DDX4Q9NQI0 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC28.14■■■□□ 2.09
DDX4Q9NQI0 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC28.14■■■□□ 2.09
DDX4Q9NQI0 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
DDX4Q9NQI0 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
DDX4Q9NQI0 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
DDX4Q9NQI0 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
DDX4Q9NQI0 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
DDX4Q9NQI0 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
DDX4Q9NQI0 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
DDX4Q9NQI0 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC28.12■■■□□ 2.09
DDX4Q9NQI0 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
DDX4Q9NQI0 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC28.12■■■□□ 2.09
DDX4Q9NQI0 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
DDX4Q9NQI0 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC28.12■■■□□ 2.09
DDX4Q9NQI0 AC019069.1-201ENST00000610008 1333 ntBASIC28.12■■■□□ 2.09
DDX4Q9NQI0 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
DDX4Q9NQI0 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
DDX4Q9NQI0 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC28.11■■■□□ 2.09
DDX4Q9NQI0 PEMT-206ENST00000435340 960 ntTSL 5 BASIC28.11■■■□□ 2.09
DDX4Q9NQI0 SSSCA1-AS1-201ENST00000567594 614 ntBASIC28.11■■■□□ 2.09
DDX4Q9NQI0 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC28.11■■■□□ 2.09
DDX4Q9NQI0 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
DDX4Q9NQI0 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
DDX4Q9NQI0 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC28.1■■■□□ 2.09
DDX4Q9NQI0 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC28.1■■■□□ 2.09
DDX4Q9NQI0 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
DDX4Q9NQI0 AL121749.1-202ENST00000609313 2153 ntBASIC28.1■■■□□ 2.09
DDX4Q9NQI0 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC28.09■■■□□ 2.09
DDX4Q9NQI0 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
DDX4Q9NQI0 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC28.09■■■□□ 2.09
DDX4Q9NQI0 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
DDX4Q9NQI0 TK2-202ENST00000417693 1046 ntTSL 2 BASIC28.09■■■□□ 2.09
DDX4Q9NQI0 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC28.09■■■□□ 2.09
DDX4Q9NQI0 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC28.09■■■□□ 2.09
DDX4Q9NQI0 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC28.09■■■□□ 2.09
DDX4Q9NQI0 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC28.09■■■□□ 2.09
DDX4Q9NQI0 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC28.08■■■□□ 2.09
DDX4Q9NQI0 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC28.08■■■□□ 2.09
DDX4Q9NQI0 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
DDX4Q9NQI0 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC28.08■■■□□ 2.09
DDX4Q9NQI0 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC28.08■■■□□ 2.09
DDX4Q9NQI0 LSM4-201ENST00000252816 986 ntTSL 2 BASIC28.08■■■□□ 2.09
DDX4Q9NQI0 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
DDX4Q9NQI0 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC28.08■■■□□ 2.09
DDX4Q9NQI0 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC28.08■■■□□ 2.09
DDX4Q9NQI0 AC010997.5-201ENST00000609182 354 ntBASIC28.08■■■□□ 2.09
DDX4Q9NQI0 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC28.08■■■□□ 2.09
DDX4Q9NQI0 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC28.08■■■□□ 2.09
DDX4Q9NQI0 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC28.08■■■□□ 2.09
DDX4Q9NQI0 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
DDX4Q9NQI0 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
DDX4Q9NQI0 AC097639.1-201ENST00000565519 1891 ntBASIC28.07■■■□□ 2.08
DDX4Q9NQI0 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC28.07■■■□□ 2.08
DDX4Q9NQI0 TRIR-202ENST00000588213 841 ntTSL 3 BASIC28.07■■■□□ 2.08
DDX4Q9NQI0 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC28.06■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms