Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
TRIM39Q9HCM9 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC23.4■■□□□ 1.34
TRIM39Q9HCM9 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC23.4■■□□□ 1.34
TRIM39Q9HCM9 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC23.39■■□□□ 1.34
TRIM39Q9HCM9 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
TRIM39Q9HCM9 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC23.39■■□□□ 1.33
TRIM39Q9HCM9 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
TRIM39Q9HCM9 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
TRIM39Q9HCM9 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
TRIM39Q9HCM9 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.38■■□□□ 1.33
TRIM39Q9HCM9 FOXO3B-201ENST00000395675 1928 ntBASIC23.38■■□□□ 1.33
TRIM39Q9HCM9 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
TRIM39Q9HCM9 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC23.38■■□□□ 1.33
TRIM39Q9HCM9 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC23.38■■□□□ 1.33
TRIM39Q9HCM9 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
TRIM39Q9HCM9 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
TRIM39Q9HCM9 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.37■■□□□ 1.33
TRIM39Q9HCM9 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
TRIM39Q9HCM9 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
TRIM39Q9HCM9 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
TRIM39Q9HCM9 AC103724.3-201ENST00000564481 992 ntBASIC23.37■■□□□ 1.33
TRIM39Q9HCM9 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
TRIM39Q9HCM9 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.37■■□□□ 1.33
TRIM39Q9HCM9 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
TRIM39Q9HCM9 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
TRIM39Q9HCM9 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
TRIM39Q9HCM9 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
TRIM39Q9HCM9 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
TRIM39Q9HCM9 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
TRIM39Q9HCM9 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
TRIM39Q9HCM9 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC23.36■■□□□ 1.33
TRIM39Q9HCM9 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
TRIM39Q9HCM9 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
TRIM39Q9HCM9 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.35■■□□□ 1.33
TRIM39Q9HCM9 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
TRIM39Q9HCM9 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
TRIM39Q9HCM9 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
TRIM39Q9HCM9 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
TRIM39Q9HCM9 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
TRIM39Q9HCM9 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
TRIM39Q9HCM9 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
TRIM39Q9HCM9 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
TRIM39Q9HCM9 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.34■■□□□ 1.33
TRIM39Q9HCM9 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC23.34■■□□□ 1.33
TRIM39Q9HCM9 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.34■■□□□ 1.33
TRIM39Q9HCM9 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
TRIM39Q9HCM9 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
TRIM39Q9HCM9 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
TRIM39Q9HCM9 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
TRIM39Q9HCM9 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
TRIM39Q9HCM9 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
TRIM39Q9HCM9 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
TRIM39Q9HCM9 KRT18P24-201ENST00000344739 1156 ntBASIC23.32■■□□□ 1.32
TRIM39Q9HCM9 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC23.32■■□□□ 1.32
TRIM39Q9HCM9 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC23.32■■□□□ 1.32
TRIM39Q9HCM9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
TRIM39Q9HCM9 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC23.31■■□□□ 1.32
TRIM39Q9HCM9 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
TRIM39Q9HCM9 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TRIM39Q9HCM9 AL031848.2-201ENST00000607670 837 ntBASIC23.31■■□□□ 1.32
TRIM39Q9HCM9 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.31■■□□□ 1.32
TRIM39Q9HCM9 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
TRIM39Q9HCM9 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TRIM39Q9HCM9 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TRIM39Q9HCM9 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TRIM39Q9HCM9 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TRIM39Q9HCM9 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
TRIM39Q9HCM9 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
TRIM39Q9HCM9 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
TRIM39Q9HCM9 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.29■■□□□ 1.32
TRIM39Q9HCM9 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.29■■□□□ 1.32
TRIM39Q9HCM9 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.29■■□□□ 1.32
TRIM39Q9HCM9 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
TRIM39Q9HCM9 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC23.28■■□□□ 1.32
TRIM39Q9HCM9 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
TRIM39Q9HCM9 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
TRIM39Q9HCM9 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TRIM39Q9HCM9 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC23.28■■□□□ 1.32
TRIM39Q9HCM9 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TRIM39Q9HCM9 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TRIM39Q9HCM9 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
TRIM39Q9HCM9 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
TRIM39Q9HCM9 AC120024.1-201ENST00000562672 995 ntBASIC23.27■■□□□ 1.32
TRIM39Q9HCM9 AL451085.2-201ENST00000605085 799 ntBASIC23.27■■□□□ 1.32
TRIM39Q9HCM9 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.26■■□□□ 1.31
TRIM39Q9HCM9 TK2-216ENST00000564917 1156 ntTSL 3 BASIC23.26■■□□□ 1.31
TRIM39Q9HCM9 THA1P-201ENST00000590384 1145 ntBASIC23.26■■□□□ 1.31
TRIM39Q9HCM9 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
TRIM39Q9HCM9 SLC6A10P-202ENST00000431994 2058 ntBASIC23.26■■□□□ 1.31
TRIM39Q9HCM9 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.26■■□□□ 1.31
TRIM39Q9HCM9 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRIM39Q9HCM9 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC23.25■■□□□ 1.31
TRIM39Q9HCM9 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRIM39Q9HCM9 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRIM39Q9HCM9 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
TRIM39Q9HCM9 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
TRIM39Q9HCM9 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
TRIM39Q9HCM9 PRTG-204ENST00000561292 833 ntTSL 3 BASIC23.24■■□□□ 1.31
TRIM39Q9HCM9 AC011551.1-201ENST00000614101 683 ntBASIC23.24■■□□□ 1.31
TRIM39Q9HCM9 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms