Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddx28Q9CWT6 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Ddx28Q9CWT6 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Ddx28Q9CWT6 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddx28Q9CWT6 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Ddx28Q9CWT6 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddx28Q9CWT6 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ddx28Q9CWT6 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx28Q9CWT6 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx28Q9CWT6 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Ddx28Q9CWT6 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx28Q9CWT6 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx28Q9CWT6 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx28Q9CWT6 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ddx28Q9CWT6 Gm10616-201ENSMUST00000205285 2127 ntBASIC19.69■□□□□ 0.74
Ddx28Q9CWT6 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx28Q9CWT6 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx28Q9CWT6 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx28Q9CWT6 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ddx28Q9CWT6 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
Ddx28Q9CWT6 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Ddx28Q9CWT6 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx28Q9CWT6 Gm22567-201ENSMUST00000175542 342 ntBASIC19.68■□□□□ 0.74
Ddx28Q9CWT6 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx28Q9CWT6 AC117769.4-201ENSMUST00000225679 685 ntBASIC19.68■□□□□ 0.74
Ddx28Q9CWT6 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx28Q9CWT6 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx28Q9CWT6 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ddx28Q9CWT6 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx28Q9CWT6 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Ddx28Q9CWT6 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx28Q9CWT6 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC19.67■□□□□ 0.74
Ddx28Q9CWT6 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx28Q9CWT6 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC19.67■□□□□ 0.74
Ddx28Q9CWT6 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx28Q9CWT6 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx28Q9CWT6 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ddx28Q9CWT6 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx28Q9CWT6 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx28Q9CWT6 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx28Q9CWT6 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx28Q9CWT6 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx28Q9CWT6 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx28Q9CWT6 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ddx28Q9CWT6 Iqck-206ENSMUST00000208658 2891 ntBASIC19.65■□□□□ 0.74
Ddx28Q9CWT6 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx28Q9CWT6 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ddx28Q9CWT6 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ddx28Q9CWT6 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ddx28Q9CWT6 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ddx28Q9CWT6 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ddx28Q9CWT6 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Ddx28Q9CWT6 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx28Q9CWT6 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx28Q9CWT6 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx28Q9CWT6 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC19.64■□□□□ 0.73
Ddx28Q9CWT6 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx28Q9CWT6 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC19.64■□□□□ 0.73
Ddx28Q9CWT6 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ddx28Q9CWT6 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx28Q9CWT6 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx28Q9CWT6 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Ddx28Q9CWT6 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx28Q9CWT6 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx28Q9CWT6 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx28Q9CWT6 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx28Q9CWT6 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx28Q9CWT6 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx28Q9CWT6 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Ddx28Q9CWT6 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Ddx28Q9CWT6 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx28Q9CWT6 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx28Q9CWT6 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Ddx28Q9CWT6 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.62■□□□□ 0.73
Ddx28Q9CWT6 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx28Q9CWT6 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Ddx28Q9CWT6 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx28Q9CWT6 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ddx28Q9CWT6 AC117245.4-201ENSMUST00000217388 1646 ntBASIC19.62■□□□□ 0.73
Ddx28Q9CWT6 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Ddx28Q9CWT6 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ddx28Q9CWT6 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ddx28Q9CWT6 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC19.61■□□□□ 0.73
Ddx28Q9CWT6 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ddx28Q9CWT6 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx28Q9CWT6 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Ddx28Q9CWT6 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx28Q9CWT6 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx28Q9CWT6 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx28Q9CWT6 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Ddx28Q9CWT6 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx28Q9CWT6 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC19.6■□□□□ 0.73
Ddx28Q9CWT6 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Ddx28Q9CWT6 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.59■□□□□ 0.73
Ddx28Q9CWT6 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddx28Q9CWT6 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddx28Q9CWT6 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddx28Q9CWT6 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddx28Q9CWT6 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Ddx28Q9CWT6 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms