Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SKA3Q8IX90 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SKA3Q8IX90 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SKA3Q8IX90 AL033527.3-201ENST00000566366 1196 ntBASIC20.81■□□□□ 0.92
SKA3Q8IX90 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SKA3Q8IX90 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SKA3Q8IX90 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.8■□□□□ 0.92
SKA3Q8IX90 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.8■□□□□ 0.92
SKA3Q8IX90 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.8■□□□□ 0.92
SKA3Q8IX90 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.8■□□□□ 0.92
SKA3Q8IX90 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SKA3Q8IX90 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SKA3Q8IX90 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SKA3Q8IX90 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SKA3Q8IX90 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SKA3Q8IX90 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.8■□□□□ 0.92
SKA3Q8IX90 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SKA3Q8IX90 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
SKA3Q8IX90 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SKA3Q8IX90 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SKA3Q8IX90 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SKA3Q8IX90 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SKA3Q8IX90 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
SKA3Q8IX90 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
SKA3Q8IX90 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SKA3Q8IX90 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SKA3Q8IX90 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SKA3Q8IX90 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.78■□□□□ 0.92
SKA3Q8IX90 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.78■□□□□ 0.92
SKA3Q8IX90 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SKA3Q8IX90 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SKA3Q8IX90 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SKA3Q8IX90 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC20.77■□□□□ 0.92
SKA3Q8IX90 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SKA3Q8IX90 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SKA3Q8IX90 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.77■□□□□ 0.92
SKA3Q8IX90 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SKA3Q8IX90 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SKA3Q8IX90 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SKA3Q8IX90 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SKA3Q8IX90 SLC6A10P-202ENST00000431994 2058 ntBASIC20.76■□□□□ 0.91
SKA3Q8IX90 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.76■□□□□ 0.91
SKA3Q8IX90 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.76■□□□□ 0.91
SKA3Q8IX90 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SKA3Q8IX90 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.76■□□□□ 0.91
SKA3Q8IX90 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SKA3Q8IX90 AC139795.1-202ENST00000500444 432 ntBASIC20.76■□□□□ 0.91
SKA3Q8IX90 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SKA3Q8IX90 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SKA3Q8IX90 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SKA3Q8IX90 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SKA3Q8IX90 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.75■□□□□ 0.91
SKA3Q8IX90 BHLHE23-202ENST00000612929 1109 ntBASIC20.75■□□□□ 0.91
SKA3Q8IX90 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SKA3Q8IX90 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SKA3Q8IX90 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SKA3Q8IX90 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
SKA3Q8IX90 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.74■□□□□ 0.91
SKA3Q8IX90 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SKA3Q8IX90 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SKA3Q8IX90 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SKA3Q8IX90 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SKA3Q8IX90 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SKA3Q8IX90 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SKA3Q8IX90 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
SKA3Q8IX90 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SKA3Q8IX90 LONRF2P2-201ENST00000439212 571 ntBASIC20.73■□□□□ 0.91
SKA3Q8IX90 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.73■□□□□ 0.91
SKA3Q8IX90 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.73■□□□□ 0.91
SKA3Q8IX90 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SKA3Q8IX90 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SKA3Q8IX90 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SKA3Q8IX90 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SKA3Q8IX90 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SKA3Q8IX90 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SKA3Q8IX90 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.72■□□□□ 0.91
SKA3Q8IX90 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SKA3Q8IX90 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SKA3Q8IX90 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.72■□□□□ 0.91
SKA3Q8IX90 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SKA3Q8IX90 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SKA3Q8IX90 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.72■□□□□ 0.91
SKA3Q8IX90 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.72■□□□□ 0.91
SKA3Q8IX90 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SKA3Q8IX90 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SKA3Q8IX90 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SKA3Q8IX90 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SKA3Q8IX90 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SKA3Q8IX90 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SKA3Q8IX90 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SKA3Q8IX90 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SKA3Q8IX90 FOXO3B-201ENST00000395675 1928 ntBASIC20.71■□□□□ 0.91
SKA3Q8IX90 AC022211.4-201ENST00000625094 2161 ntBASIC20.71■□□□□ 0.91
SKA3Q8IX90 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SKA3Q8IX90 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SKA3Q8IX90 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SKA3Q8IX90 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.71■□□□□ 0.91
SKA3Q8IX90 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SKA3Q8IX90 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC20.7■□□□□ 0.9
SKA3Q8IX90 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms