Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC15.01□□□□□ -0.01
HSPG2P98160 CLTA-206ENST00000466396 695 ntTSL 2 BASIC15.01□□□□□ -0.01
HSPG2P98160 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
HSPG2P98160 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC15.01□□□□□ -0.01
HSPG2P98160 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
HSPG2P98160 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
HSPG2P98160 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC15.01□□□□□ -0.01
HSPG2P98160 GAK-223ENST00000628912 497 ntTSL 5 BASIC15.01□□□□□ -0.01
HSPG2P98160 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HSPG2P98160 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC15□□□□□ -0.01
HSPG2P98160 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HSPG2P98160 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC15□□□□□ -0.01
HSPG2P98160 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
HSPG2P98160 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
HSPG2P98160 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HSPG2P98160 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC15□□□□□ -0.01
HSPG2P98160 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HSPG2P98160 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
HSPG2P98160 AC034268.1-201ENST00000441047 882 ntBASIC15□□□□□ -0.01
HSPG2P98160 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC15□□□□□ -0.01
HSPG2P98160 CLTA-210ENST00000540080 989 ntTSL 2 BASIC15□□□□□ -0.01
HSPG2P98160 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
HSPG2P98160 RASA4CP-201ENST00000424092 1398 ntBASIC15□□□□□ -0.01
HSPG2P98160 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HSPG2P98160 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HSPG2P98160 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HSPG2P98160 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HSPG2P98160 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC14.99□□□□□ -0.01
HSPG2P98160 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HSPG2P98160 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
HSPG2P98160 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC14.99□□□□□ -0.01
HSPG2P98160 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
HSPG2P98160 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HSPG2P98160 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HSPG2P98160 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC14.98□□□□□ -0.01
HSPG2P98160 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC14.98□□□□□ -0.01
HSPG2P98160 HACD1-201ENST00000326961 773 ntTSL 2 BASIC14.98□□□□□ -0.01
HSPG2P98160 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC14.98□□□□□ -0.01
HSPG2P98160 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HSPG2P98160 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
HSPG2P98160 HLA-L-209ENST00000420110 1011 ntBASIC14.98□□□□□ -0.01
HSPG2P98160 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HSPG2P98160 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HSPG2P98160 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HSPG2P98160 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
HSPG2P98160 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC14.96□□□□□ -0.01
HSPG2P98160 AL031602.1-201ENST00000633169 911 ntBASIC14.96□□□□□ -0.01
HSPG2P98160 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HSPG2P98160 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
HSPG2P98160 IRS3P-201ENST00000223076 1006 ntBASIC14.96□□□□□ -0.01
HSPG2P98160 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC14.96□□□□□ -0.01
HSPG2P98160 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC14.96□□□□□ -0.01
HSPG2P98160 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HSPG2P98160 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
HSPG2P98160 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HSPG2P98160 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC14.96□□□□□ -0.01
HSPG2P98160 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC14.95□□□□□ -0.02
HSPG2P98160 SRD5A1P1-201ENST00000442297 786 ntBASIC14.95□□□□□ -0.02
HSPG2P98160 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HSPG2P98160 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC14.95□□□□□ -0.02
HSPG2P98160 RHOF-204ENST00000537265 699 ntTSL 2 BASIC14.95□□□□□ -0.02
HSPG2P98160 DLX3-202ENST00000512495 834 ntTSL 2 BASIC14.95□□□□□ -0.02
HSPG2P98160 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC14.95□□□□□ -0.02
HSPG2P98160 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC14.95□□□□□ -0.02
HSPG2P98160 SLC47A1P1-202ENST00000449666 945 ntBASIC14.95□□□□□ -0.02
HSPG2P98160 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
HSPG2P98160 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
HSPG2P98160 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC14.94□□□□□ -0.02
HSPG2P98160 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HSPG2P98160 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC14.94□□□□□ -0.02
HSPG2P98160 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HSPG2P98160 ABHD17AP1-201ENST00000358206 933 ntBASIC14.94□□□□□ -0.02
HSPG2P98160 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HSPG2P98160 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC14.93□□□□□ -0.02
HSPG2P98160 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC14.93□□□□□ -0.02
HSPG2P98160 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
HSPG2P98160 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC14.93□□□□□ -0.02
HSPG2P98160 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HSPG2P98160 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC14.92□□□□□ -0.02
HSPG2P98160 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HSPG2P98160 ASB1-202ENST00000409297 878 ntTSL 5 BASIC14.92□□□□□ -0.02
HSPG2P98160 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HSPG2P98160 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
HSPG2P98160 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HSPG2P98160 SNX5-217ENST00000606557 1087 ntBASIC14.92□□□□□ -0.02
HSPG2P98160 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HSPG2P98160 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC14.92□□□□□ -0.02
HSPG2P98160 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC14.91□□□□□ -0.02
HSPG2P98160 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
HSPG2P98160 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
HSPG2P98160 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HSPG2P98160 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
HSPG2P98160 SYT6-210ENST00000641643 1587 ntBASIC14.91□□□□□ -0.02
HSPG2P98160 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC14.91□□□□□ -0.02
HSPG2P98160 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HSPG2P98160 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC14.9□□□□□ -0.02
HSPG2P98160 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HSPG2P98160 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HSPG2P98160 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HSPG2P98160 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms