Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
RFC4P35249 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
RFC4P35249 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
RFC4P35249 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
RFC4P35249 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
RFC4P35249 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RFC4P35249 TFPT-201ENST00000391757 774 ntTSL 5 BASIC30.12■■■□□ 2.41
RFC4P35249 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
RFC4P35249 SSSCA1-AS1-201ENST00000567594 614 ntBASIC30.12■■■□□ 2.41
RFC4P35249 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC30.12■■■□□ 2.41
RFC4P35249 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC30.12■■■□□ 2.41
RFC4P35249 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
RFC4P35249 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC30.11■■■□□ 2.41
RFC4P35249 AC142381.2-201ENST00000566120 298 ntBASIC30.11■■■□□ 2.41
RFC4P35249 RARRES2P6-201ENST00000567333 442 ntBASIC30.11■■■□□ 2.41
RFC4P35249 AC092666.2-201ENST00000613287 246 ntBASIC30.11■■■□□ 2.41
RFC4P35249 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC30.11■■■□□ 2.41
RFC4P35249 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
RFC4P35249 AC139426.1-201ENST00000568218 2529 ntBASIC30.11■■■□□ 2.41
RFC4P35249 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
RFC4P35249 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC30.1■■■□□ 2.41
RFC4P35249 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC30.1■■■□□ 2.41
RFC4P35249 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC30.09■■■□□ 2.41
RFC4P35249 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC30.09■■■□□ 2.41
RFC4P35249 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
RFC4P35249 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC30.08■■■□□ 2.41
RFC4P35249 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
RFC4P35249 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC30.08■■■□□ 2.41
RFC4P35249 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
RFC4P35249 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
RFC4P35249 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC30.07■■■□□ 2.4
RFC4P35249 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC30.07■■■□□ 2.4
RFC4P35249 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC30.07■■■□□ 2.4
RFC4P35249 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
RFC4P35249 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC30.06■■■□□ 2.4
RFC4P35249 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC30.06■■■□□ 2.4
RFC4P35249 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC30.06■■■□□ 2.4
RFC4P35249 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC30.06■■■□□ 2.4
RFC4P35249 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
RFC4P35249 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
RFC4P35249 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
RFC4P35249 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
RFC4P35249 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
RFC4P35249 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
RFC4P35249 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
RFC4P35249 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
RFC4P35249 ST7-202ENST00000323984 2142 ntTSL 5 BASIC30.04■■■□□ 2.4
RFC4P35249 ST7-207ENST00000393449 2127 ntTSL 5 BASIC30.04■■■□□ 2.4
RFC4P35249 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC30.04■■■□□ 2.4
RFC4P35249 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
RFC4P35249 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
RFC4P35249 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
RFC4P35249 UNC93B3-201ENST00000308076 687 ntBASIC30.03■■■□□ 2.4
RFC4P35249 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC30.03■■■□□ 2.4
RFC4P35249 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
RFC4P35249 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
RFC4P35249 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
RFC4P35249 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC30.01■■■□□ 2.39
RFC4P35249 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC30.01■■■□□ 2.39
RFC4P35249 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
RFC4P35249 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
RFC4P35249 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC30.01■■■□□ 2.39
RFC4P35249 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
RFC4P35249 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC30.01■■■□□ 2.39
RFC4P35249 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC30.01■■■□□ 2.39
RFC4P35249 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
RFC4P35249 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC30■■■□□ 2.39
RFC4P35249 CLTA-206ENST00000466396 695 ntTSL 2 BASIC30■■■□□ 2.39
RFC4P35249 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC30■■■□□ 2.39
RFC4P35249 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
RFC4P35249 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
RFC4P35249 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC29.99■■■□□ 2.39
RFC4P35249 AC026271.2-201ENST00000428091 497 ntBASIC29.99■■■□□ 2.39
RFC4P35249 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC29.99■■■□□ 2.39
RFC4P35249 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC29.99■■■□□ 2.39
RFC4P35249 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
RFC4P35249 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC29.98■■■□□ 2.39
RFC4P35249 SUDS3P1-201ENST00000505831 966 ntBASIC29.98■■■□□ 2.39
RFC4P35249 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC29.98■■■□□ 2.39
RFC4P35249 AL031432.3-201ENST00000607698 485 ntBASIC29.98■■■□□ 2.39
RFC4P35249 AL136162.1-201ENST00000607711 1078 ntBASIC29.98■■■□□ 2.39
RFC4P35249 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC29.98■■■□□ 2.39
RFC4P35249 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC29.98■■■□□ 2.39
RFC4P35249 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC29.98■■■□□ 2.39
RFC4P35249 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC29.98■■■□□ 2.39
RFC4P35249 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC29.98■■■□□ 2.39
RFC4P35249 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
RFC4P35249 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
RFC4P35249 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
RFC4P35249 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
RFC4P35249 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC29.97■■■□□ 2.39
RFC4P35249 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC29.97■■■□□ 2.39
RFC4P35249 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC29.97■■■□□ 2.39
RFC4P35249 MIR6722-201ENST00000617286 78 ntBASIC29.97■■■□□ 2.39
RFC4P35249 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC29.97■■■□□ 2.39
RFC4P35249 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC29.97■■■□□ 2.39
RFC4P35249 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC29.96■■■□□ 2.39
RFC4P35249 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC29.96■■■□□ 2.39
RFC4P35249 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC29.96■■■□□ 2.39
RFC4P35249 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC29.96■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 165.5 ms