Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.01■□□□□ 0.95
LIMS3P0CW19 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.01■□□□□ 0.95
LIMS3P0CW19 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC21.01■□□□□ 0.95
LIMS3P0CW19 DUX4L11-201ENST00000611504 1267 ntBASIC21.01■□□□□ 0.95
LIMS3P0CW19 DUX4L12-201ENST00000614593 1267 ntBASIC21.01■□□□□ 0.95
LIMS3P0CW19 DUX4L14-201ENST00000621227 1267 ntBASIC21.01■□□□□ 0.95
LIMS3P0CW19 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
LIMS3P0CW19 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMS3P0CW19 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIMS3P0CW19 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21■□□□□ 0.95
LIMS3P0CW19 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21■□□□□ 0.95
LIMS3P0CW19 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIMS3P0CW19 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIMS3P0CW19 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIMS3P0CW19 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.99■□□□□ 0.95
LIMS3P0CW19 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMS3P0CW19 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIMS3P0CW19 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIMS3P0CW19 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMS3P0CW19 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMS3P0CW19 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIMS3P0CW19 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.98■□□□□ 0.95
LIMS3P0CW19 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMS3P0CW19 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.97■□□□□ 0.95
LIMS3P0CW19 ABCB10P4-201ENST00000566803 2184 ntBASIC20.97■□□□□ 0.95
LIMS3P0CW19 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LIMS3P0CW19 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMS3P0CW19 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMS3P0CW19 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMS3P0CW19 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
LIMS3P0CW19 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
LIMS3P0CW19 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.97■□□□□ 0.95
LIMS3P0CW19 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
LIMS3P0CW19 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.97■□□□□ 0.95
LIMS3P0CW19 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMS3P0CW19 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LIMS3P0CW19 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.96■□□□□ 0.95
LIMS3P0CW19 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.96■□□□□ 0.95
LIMS3P0CW19 MIR6089-201ENST00000616698 64 ntBASIC20.96■□□□□ 0.95
LIMS3P0CW19 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.96■□□□□ 0.95
LIMS3P0CW19 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.96■□□□□ 0.95
LIMS3P0CW19 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
LIMS3P0CW19 AC079834.2-201ENST00000609776 1949 ntBASIC20.96■□□□□ 0.95
LIMS3P0CW19 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.96■□□□□ 0.95
LIMS3P0CW19 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIMS3P0CW19 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.95■□□□□ 0.94
LIMS3P0CW19 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
LIMS3P0CW19 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIMS3P0CW19 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LIMS3P0CW19 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
LIMS3P0CW19 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
LIMS3P0CW19 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIMS3P0CW19 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
LIMS3P0CW19 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.94■□□□□ 0.94
LIMS3P0CW19 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LIMS3P0CW19 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMS3P0CW19 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMS3P0CW19 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LIMS3P0CW19 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMS3P0CW19 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.93■□□□□ 0.94
LIMS3P0CW19 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.93■□□□□ 0.94
LIMS3P0CW19 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.92■□□□□ 0.94
LIMS3P0CW19 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMS3P0CW19 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMS3P0CW19 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMS3P0CW19 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMS3P0CW19 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMS3P0CW19 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.91■□□□□ 0.94
LIMS3P0CW19 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
LIMS3P0CW19 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMS3P0CW19 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMS3P0CW19 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.91■□□□□ 0.94
LIMS3P0CW19 AC126177.7-201ENST00000547904 679 ntBASIC20.91■□□□□ 0.94
LIMS3P0CW19 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
LIMS3P0CW19 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC20.91■□□□□ 0.94
LIMS3P0CW19 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMS3P0CW19 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMS3P0CW19 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
LIMS3P0CW19 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
LIMS3P0CW19 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMS3P0CW19 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMS3P0CW19 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.89■□□□□ 0.94
LIMS3P0CW19 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.89■□□□□ 0.94
LIMS3P0CW19 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
LIMS3P0CW19 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.89■□□□□ 0.94
LIMS3P0CW19 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMS3P0CW19 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LIMS3P0CW19 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LIMS3P0CW19 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMS3P0CW19 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMS3P0CW19 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMS3P0CW19 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMS3P0CW19 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
LIMS3P0CW19 C9orf163-202ENST00000624034 2573 ntBASIC20.88■□□□□ 0.93
LIMS3P0CW19 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.88■□□□□ 0.93
LIMS3P0CW19 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.88■□□□□ 0.93
LIMS3P0CW19 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMS3P0CW19 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMS3P0CW19 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
LIMS3P0CW19 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms