Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 CHTF18-204ENST00000440239 1801 ntTSL 1 (best)21.05■□□□□ 0.963e-6■■■□□ 17.2
CDC40O60508 RFWD3-208ENST00000575113 706 ntTSL 320.11■□□□□ 0.813e-6■■■□□ 17.2
CDC40O60508 SDC1-205ENST00000447124 591 ntTSL 419.19■□□□□ 0.663e-6■■■□□ 17.2
CDC40O60508 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.593e-6■■■□□ 17.2
CDC40O60508 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.483e-6■■■□□ 17.2
CDC40O60508 CHTF18-218ENST00000569270 711 ntTSL 517.99■□□□□ 0.473e-6■■■□□ 17.2
CDC40O60508 RFWD3-203ENST00000571776 936 ntTSL 217.2■□□□□ 0.343e-6■■■□□ 17.2
CDC40O60508 RPL12-204ENST00000497825 864 ntTSL 216.39■□□□□ 0.213e-6■■■□□ 17.2
CDC40O60508 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.213e-6■■■□□ 17.2
CDC40O60508 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.173e-6■■■□□ 17.2
CDC40O60508 AP002990.1-201ENST00000526409 1954 ntTSL 516.07■□□□□ 0.163e-6■■■□□ 17.2
CDC40O60508 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.163e-6■■■□□ 17.2
CDC40O60508 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.153e-6■■■□□ 17.2
CDC40O60508 SLCO4A1-207ENST00000495889 543 ntTSL 315.96■□□□□ 0.153e-6■■■□□ 17.2
CDC40O60508 GSPT1-204ENST00000562169 466 ntTSL 315.94■□□□□ 0.143e-6■■■□□ 17.2
CDC40O60508 NGDN-213ENST00000557097 270 ntTSL 215.7■□□□□ 0.13e-6■■■□□ 17.2
CDC40O60508 NGDN-203ENST00000553336 712 ntTSL 315.7■□□□□ 0.13e-6■■■□□ 17.2
CDC40O60508 NGDN-208ENST00000556378 803 ntTSL 215.31■□□□□ 0.043e-6■■■□□ 17.2
CDC40O60508 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -03e-6■■■□□ 17.2
CDC40O60508 RFWD3-207ENST00000572990 599 ntTSL 414.83□□□□□ -0.043e-6■■■□□ 17.2
CDC40O60508 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.043e-6■■■□□ 17.2
CDC40O60508 RPTOR-209ENST00000575542 5536 ntTSL 1 (best)14.64□□□□□ -0.073e-6■■■□□ 17.2
CDC40O60508 RPL12-203ENST00000497322 2275 ntTSL 214.6□□□□□ -0.073e-6■■■□□ 17.2
CDC40O60508 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.143e-6■■■□□ 17.2
CDC40O60508 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.163e-6■■■□□ 17.2
CDC40O60508 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.173e-6■■■□□ 17.2
CDC40O60508 EEF1G-203ENST00000525340 2496 ntTSL 1 (best)13.9□□□□□ -0.183e-6■■■□□ 17.2
CDC40O60508 CHTF18-217ENST00000567620 701 ntTSL 513.86□□□□□ -0.193e-6■■■□□ 17.2
CDC40O60508 CHTF18-208ENST00000471202 4494 ntTSL 213.63□□□□□ -0.233e-6■■■□□ 17.2
CDC40O60508 SDC1-204ENST00000429035 646 ntTSL 313.59□□□□□ -0.233e-6■■■□□ 17.2
CDC40O60508 CHTF18-207ENST00000464728 4088 ntTSL 213.55□□□□□ -0.243e-6■■■□□ 17.2
CDC40O60508 RFWD3-204ENST00000572337 586 ntTSL 413.45□□□□□ -0.263e-6■■■□□ 17.2
CDC40O60508 SFXN2-202ENST00000459894 2324 ntTSL 213.02□□□□□ -0.333e-6■■■□□ 17.2
CDC40O60508 GSPT1-210ENST00000568849 790 ntTSL 312.98□□□□□ -0.333e-6■■■□□ 17.2
CDC40O60508 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.343e-6■■■□□ 17.2
CDC40O60508 SFXN2-203ENST00000480358 2315 ntTSL 512.7□□□□□ -0.383e-6■■■□□ 17.2
CDC40O60508 SLCO4A1-205ENST00000466961 819 ntTSL 312.41□□□□□ -0.423e-6■■■□□ 17.2
CDC40O60508 RFWD3-201ENST00000361070 4957 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.433e-6■■■□□ 17.2
CDC40O60508 SLCO4A1-203ENST00000451793 856 ntTSL 212.17□□□□□ -0.463e-6■■■□□ 17.2
CDC40O60508 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.493e-6■■■□□ 17.2
CDC40O60508 CHTF18-201ENST00000262315 3090 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.493e-6■■■□□ 17.2
CDC40O60508 PLEC-210ENST00000527096 13713 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.543e-6■■■□□ 17.2
CDC40O60508 RFWD3-202ENST00000571750 3033 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.573e-6■■■□□ 17.2
CDC40O60508 SRCAP-202ENST00000395059 9126 ntTSL 2 BASIC11.28□□□□□ -0.63e-6■■■□□ 17.2
CDC40O60508 SLCO4A1-209ENST00000497919 440 ntTSL 211.21□□□□□ -0.613e-6■■■□□ 17.2
CDC40O60508 SDC1-206ENST00000482879 558 ntTSL 411.14□□□□□ -0.633e-6■■■□□ 17.2
CDC40O60508 NGDN-212ENST00000556953 614 ntTSL 210.91□□□□□ -0.663e-6■■■□□ 17.2
CDC40O60508 SFXN2-201ENST00000369893 6866 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.73e-6■■■□□ 17.2
CDC40O60508 RPL12-205ENST00000536368 499 ntTSL 1 (best) BASIC10.52□□□□□ -0.733e-6■■■□□ 17.2
CDC40O60508 SRCAP-205ENST00000483083 5937 ntTSL 210.48□□□□□ -0.733e-6■■■□□ 17.2
CDC40O60508 EEF1G-204ENST00000532986 578 ntTSL 410.35□□□□□ -0.753e-6■■■□□ 17.2
CDC40O60508 SLCO4A1-206ENST00000470412 986 ntTSL 510.09□□□□□ -0.793e-6■■■□□ 17.2
CDC40O60508 KDM1A-205ENST00000494920 905 ntTSL 39.97□□□□□ -0.813e-6■■■□□ 17.2
CDC40O60508 GSPT1-201ENST00000420576 1603 ntAPPRIS ALT2 TSL 1 (best) BASIC9.24□□□□□ -0.933e-6■■■□□ 17.2
CDC40O60508 RSL1D1-204ENST00000571133 5483 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.953e-6■■■□□ 17.2
CDC40O60508 RFWD3-212ENST00000576652 528 ntTSL 48.85□□□□□ -0.993e-6■■■□□ 17.2
CDC40O60508 RFWD3-211ENST00000575397 841 ntTSL 28.56□□□□□ -1.043e-6■■■□□ 17.2
CDC40O60508 GSPT1-208ENST00000565267 1864 ntTSL 58.34□□□□□ -1.073e-6■■■□□ 17.2
CDC40O60508 SLCO4A1-204ENST00000466818 556 ntTSL 38.3□□□□□ -1.083e-6■■■□□ 17.2
CDC40O60508 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC8.26□□□□□ -1.093e-6■■■□□ 17.2
CDC40O60508 NGDN-201ENST00000397154 2204 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.123e-6■■■□□ 17.2
CDC40O60508 GSPT1-206ENST00000563468 1962 ntAPPRIS ALT2 TSL 2 BASIC7.96□□□□□ -1.143e-6■■■□□ 17.2
CDC40O60508 RSL1D1-209ENST00000573618 710 ntTSL 57.89□□□□□ -1.153e-6■■■□□ 17.2
CDC40O60508 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.163e-6■■■□□ 17.2
CDC40O60508 RSL1D1-208ENST00000573251 894 ntTSL 37.69□□□□□ -1.183e-6■■■□□ 17.2
CDC40O60508 RPL12-201ENST00000361436 633 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.23e-6■■■□□ 17.2
CDC40O60508 KDM1A-203ENST00000465864 568 ntTSL 57.53□□□□□ -1.23e-6■■■□□ 17.2
CDC40O60508 RSL1D1-202ENST00000396503 1470 ntTSL 27.44□□□□□ -1.223e-6■■■□□ 17.2
CDC40O60508 RSL1D1-206ENST00000572090 759 ntTSL 37.06□□□□□ -1.283e-6■■■□□ 17.2
CDC40O60508 RSL1D1-201ENST00000355674 1323 ntAPPRIS ALT2 TSL 1 (best)6.95□□□□□ -1.33e-6■■■□□ 17.2
CDC40O60508 SMARCC1-202ENST00000425518 3827 ntTSL 26.81□□□□□ -1.323e-6■■■□□ 17.2
CDC40O60508 NGDN-205ENST00000555128 786 ntAPPRIS ALT2 TSL 26.11□□□□□ -1.433e-6■■■□□ 17.2
CDC40O60508 RSL1D1-207ENST00000573029 766 ntTSL 35.8□□□□□ -1.483e-6■■■□□ 17.2
CDC40O60508 SMARCC1-204ENST00000462198 785 ntTSL 25.42□□□□□ -1.543e-6■■■□□ 17.2
CDC40O60508 RSL1D1-211ENST00000574287 485 ntTSL 25.15□□□□□ -1.593e-6■■■□□ 17.2
CDC40O60508 NGDN-204ENST00000553439 2763 ntTSL 24.83□□□□□ -1.643e-6■■■□□ 17.2
CDC40O60508 RSL1D1-203ENST00000570767 871 ntTSL 54.68□□□□□ -1.663e-6■■■□□ 17.2
CDC40O60508 SMARCC1-206ENST00000485737 631 ntTSL 44.24□□□□□ -1.733e-6■■■□□ 17.2
CDC40O60508 RPL12-202ENST00000483598 344 ntTSL 24.08□□□□□ -1.763e-6■■■□□ 17.2
CDC40O60508 NEU4-216ENST00000494678 491 ntTSL 417.61■□□□□ 0.411e-6■■■□□ 17
CDC40O60508 NEU4-213ENST00000435934 451 ntTSL 415.64■□□□□ 0.091e-6■■■□□ 17
CDC40O60508 AHNAK-203ENST00000525875 793 ntTSL 39.76□□□□□ -0.853e-7■■■□□ 17
CDC40O60508 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.23■■□□□ 1.153e-8■■■□□ 17
CDC40O60508 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.843e-8■■■□□ 17
CDC40O60508 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.823e-8■■■□□ 17
CDC40O60508 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.14■□□□□ 0.813e-8■■■□□ 17
CDC40O60508 GRAMD1A-212ENST00000600231 2534 ntTSL 219.62■□□□□ 0.733e-8■■■□□ 17
CDC40O60508 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.593e-8■■■□□ 17
CDC40O60508 LPCAT1-206ENST00000514484 756 ntTSL 317.47■□□□□ 0.393e-8■■■□□ 17
CDC40O60508 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.21■□□□□ 0.033e-8■■■□□ 17
CDC40O60508 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.013e-8■■■□□ 17
CDC40O60508 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.023e-8■■■□□ 17
CDC40O60508 COMT-207ENST00000412786 871 ntAPPRIS ALT2 TSL 214.92□□□□□ -0.023e-8■■■□□ 17
CDC40O60508 GRAMD1A-213ENST00000603669 552 ntTSL 514.25□□□□□ -0.133e-8■■■□□ 17
CDC40O60508 COMT-201ENST00000207636 1319 ntTSL 514.09□□□□□ -0.153e-8■■■□□ 17
CDC40O60508 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.153e-8■■■□□ 17
CDC40O60508 COMT-208ENST00000428707 724 ntTSL 312.76□□□□□ -0.373e-8■■■□□ 17
CDC40O60508 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC12.68□□□□□ -0.383e-8■■■□□ 17
CDC40O60508 ABCA11P-203ENST00000507854 1503 ntTSL 1 (best)9.75□□□□□ -0.853e-8■■■□□ 17
CDC40O60508 GRAMD1A-204ENST00000594597 567 ntTSL 49.55□□□□□ -0.883e-8■■■□□ 17
Retrieved 100 of 5,364 protein–RNA pairs in 343.4 ms