Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 STX16-215ENST00000476384 936 ntTSL 517.11■□□□□ 0.331e-6■■□□□ 11.9
LIN28BQ6ZN17 STX16-216ENST00000483434 874 ntTSL 316.08■□□□□ 0.161e-6■■□□□ 11.9
LIN28BQ6ZN17 STX16-211ENST00000460655 572 ntTSL 415.01□□□□□ -0.011e-6■■□□□ 11.9
LIN28BQ6ZN17 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.231e-6■■□□□ 11.9
LIN28BQ6ZN17 CNTROB-214ENST00000576723 2461 ntTSL 213.46□□□□□ -0.261e-6■■□□□ 11.9
LIN28BQ6ZN17 STX16-220ENST00000496117 528 ntTSL 513.21□□□□□ -0.291e-6■■□□□ 11.9
LIN28BQ6ZN17 CNTROB-203ENST00000565740 2783 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.41e-6■■□□□ 11.9
LIN28BQ6ZN17 CNTROB-202ENST00000563694 3705 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.481e-6■■□□□ 11.9
LIN28BQ6ZN17 STX16-202ENST00000355957 4897 ntTSL 2 BASIC11.89□□□□□ -0.511e-6■■□□□ 11.9
LIN28BQ6ZN17 STX16-205ENST00000361830 4318 ntTSL 5 BASIC11.63□□□□□ -0.551e-6■■□□□ 11.9
LIN28BQ6ZN17 CNTROB-201ENST00000380262 3769 ntTSL 1 (best) BASIC11.52□□□□□ -0.571e-6■■□□□ 11.9
LIN28BQ6ZN17 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.61e-6■■□□□ 11.9
LIN28BQ6ZN17 CNTROB-207ENST00000571632 2960 ntTSL 210.62□□□□□ -0.711e-6■■□□□ 11.9
LIN28BQ6ZN17 GARS-208ENST00000485784 761 ntTSL 210.4□□□□□ -0.741e-6■■□□□ 11.9
LIN28BQ6ZN17 STX16-204ENST00000359617 4273 ntTSL 5 BASIC10.24□□□□□ -0.771e-6■■□□□ 11.9
LIN28BQ6ZN17 PPM1A-204ENST00000525399 854 ntTSL 38.75□□□□□ -1.011e-6■■□□□ 11.9
LIN28BQ6ZN17 GARS-209ENST00000496643 772 ntTSL 25.97□□□□□ -1.451e-6■■□□□ 11.9
LIN28BQ6ZN17 GARS-204ENST00000465748 447 ntTSL 22.38□□□□□ -2.031e-6■■□□□ 11.9
LIN28BQ6ZN17 HNRNPU-207ENST00000468690 5273 ntTSL 57.52□□□□□ -1.212e-10■■□□□ 11.9
LIN28BQ6ZN17 CADM1-219ENST00000545960 630 ntTSL 517.99■□□□□ 0.471e-7■■□□□ 11.9
LIN28BQ6ZN17 CHID1-217ENST00000530939 571 ntTSL 430.05■■■□□ 2.42e-6■■□□□ 11.9
LIN28BQ6ZN17 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.284e-9■■□□□ 11.9
LIN28BQ6ZN17 RFWD2-207ENST00000474194 975 ntTSL 327.93■■■□□ 2.064e-9■■□□□ 11.9
LIN28BQ6ZN17 CMPK1-202ENST00000371871 1212 ntTSL 226.01■■□□□ 1.756e-20■■□□□ 11.9
LIN28BQ6ZN17 TUSC2-205ENST00000462137 834 ntTSL 324.66■■□□□ 1.542e-6■■□□□ 11.9
LIN28BQ6ZN17 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC24.5■■□□□ 1.514e-9■■□□□ 11.9
LIN28BQ6ZN17 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.182e-6■■□□□ 11.9
LIN28BQ6ZN17 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.084e-9■■□□□ 11.9
LIN28BQ6ZN17 KRT18-206ENST00000549078 2088 ntTSL 520.71■□□□□ 0.914e-9■■□□□ 11.9
LIN28BQ6ZN17 RFLNA-203ENST00000389727 2385 ntAPPRIS P2 TSL 520.43■□□□□ 0.864e-6■■□□□ 11.9
LIN28BQ6ZN17 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.2■□□□□ 0.824e-9■■□□□ 11.9
LIN28BQ6ZN17 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.734e-6■■□□□ 11.9
LIN28BQ6ZN17 INTS10-210ENST00000521357 876 ntTSL 518.49■□□□□ 0.552e-6■■□□□ 11.9
LIN28BQ6ZN17 THUMPD1-203ENST00000565248 1099 ntTSL 317.6■□□□□ 0.412e-6■■□□□ 11.9
LIN28BQ6ZN17 PEBP1-202ENST00000542939 708 ntTSL 317.25■□□□□ 0.352e-6■■□□□ 11.9
LIN28BQ6ZN17 HDAC2-209ENST00000520895 551 ntTSL 417.16■□□□□ 0.342e-6■■□□□ 11.9
LIN28BQ6ZN17 AC004922.1-202ENST00000441989 1702 ntTSL 216.6■□□□□ 0.252e-6■■□□□ 11.9
LIN28BQ6ZN17 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.244e-6■■□□□ 11.9
LIN28BQ6ZN17 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.232e-6■■□□□ 11.9
LIN28BQ6ZN17 VARS-227ENST00000489979 658 ntTSL 316.34■□□□□ 0.212e-6■■□□□ 11.9
LIN28BQ6ZN17 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.24e-9■■□□□ 11.9
LIN28BQ6ZN17 KRT18-203ENST00000546656 521 ntTSL 216.03■□□□□ 0.164e-9■■□□□ 11.9
LIN28BQ6ZN17 THUMPD1-204ENST00000569768 635 ntTSL 215.81■□□□□ 0.122e-6■■□□□ 11.9
LIN28BQ6ZN17 ARPC1A-204ENST00000471960 741 ntTSL 315.8■□□□□ 0.122e-6■■□□□ 11.9
LIN28BQ6ZN17 APOC1-208ENST00000592535 430 ntTSL 1 (best)15.77■□□□□ 0.122e-6■■□□□ 11.9
LIN28BQ6ZN17 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.062e-6■■□□□ 11.9
LIN28BQ6ZN17 CHID1-222ENST00000533059 578 ntTSL 315.42■□□□□ 0.062e-6■■□□□ 11.9
LIN28BQ6ZN17 ARPC1A-202ENST00000432786 1516 ntTSL 515.37■□□□□ 0.052e-6■■□□□ 11.9
LIN28BQ6ZN17 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.052e-6■■□□□ 11.9
LIN28BQ6ZN17 EEA1-202ENST00000418984 2542 ntTSL 515.24■□□□□ 0.032e-6■■□□□ 11.9
LIN28BQ6ZN17 APOC1-209ENST00000592885 562 ntTSL 3 BASIC15.17■□□□□ 0.022e-6■■□□□ 11.9
LIN28BQ6ZN17 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC14.9□□□□□ -0.026e-20■■□□□ 11.9
LIN28BQ6ZN17 ZC3H4-204ENST00000597069 664 ntTSL 414.84□□□□□ -0.032e-6■■□□□ 11.9
LIN28BQ6ZN17 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.084e-6■■□□□ 11.9
LIN28BQ6ZN17 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.094e-6■■□□□ 11.9
LIN28BQ6ZN17 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.172e-6■■□□□ 11.9
LIN28BQ6ZN17 HDAC2-211ENST00000521233 733 ntTSL 213.76□□□□□ -0.212e-6■■□□□ 11.9
LIN28BQ6ZN17 EXOC4-208ENST00000468932 753 ntTSL 313.41□□□□□ -0.264e-9■■□□□ 11.9
LIN28BQ6ZN17 RFLNA-204ENST00000545615 449 ntTSL 313.29□□□□□ -0.284e-6■■□□□ 11.9
LIN28BQ6ZN17 APOC1-206ENST00000590334 508 ntTSL 513.17□□□□□ -0.32e-6■■□□□ 11.9
LIN28BQ6ZN17 KRT18-204ENST00000548015 928 ntTSL 212.69□□□□□ -0.384e-9■■□□□ 11.9
LIN28BQ6ZN17 NUP98-211ENST00000483285 545 ntTSL 212.67□□□□□ -0.382e-6■■□□□ 11.9
LIN28BQ6ZN17 PER1-214ENST00000582719 3677 ntTSL 512.39□□□□□ -0.432e-6■■□□□ 11.9
LIN28BQ6ZN17 PIGS-206ENST00000487231 3088 ntTSL 1 (best)12.21□□□□□ -0.464e-9■■□□□ 11.9
LIN28BQ6ZN17 EXOC4-207ENST00000466000 555 ntTSL 411.86□□□□□ -0.514e-9■■□□□ 11.9
LIN28BQ6ZN17 RFWD2-203ENST00000367667 2034 ntTSL 1 (best)11.82□□□□□ -0.524e-9■■□□□ 11.9
LIN28BQ6ZN17 PER1-211ENST00000581082 4521 ntTSL 5 BASIC11.52□□□□□ -0.572e-6■■□□□ 11.9
LIN28BQ6ZN17 APOC1-203ENST00000588802 553 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.572e-6■■□□□ 11.9
LIN28BQ6ZN17 ZC3H4-202ENST00000594019 3259 ntTSL 211.51□□□□□ -0.572e-6■■□□□ 11.9
LIN28BQ6ZN17 INTS9-201ENST00000416984 2759 ntTSL 2 BASIC11.23□□□□□ -0.612e-6■■□□□ 11.9
LIN28BQ6ZN17 THUMPD1-202ENST00000396083 2624 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.612e-6■■□□□ 11.9
LIN28BQ6ZN17 APOC1-205ENST00000589781 273 ntTSL 3 BASIC11.01□□□□□ -0.652e-6■■□□□ 11.9
LIN28BQ6ZN17 INTS9-213ENST00000521777 2430 ntTSL 2 BASIC10.95□□□□□ -0.662e-6■■□□□ 11.9
LIN28BQ6ZN17 INTS9-217ENST00000523303 2578 ntTSL 1 (best)10.9□□□□□ -0.662e-6■■□□□ 11.9
LIN28BQ6ZN17 INTS9-211ENST00000521022 2544 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.672e-6■■□□□ 11.9
LIN28BQ6ZN17 ZNF664-201ENST00000337815 4227 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.674e-6■■□□□ 11.9
LIN28BQ6ZN17 APOC1-207ENST00000592176 514 ntTSL 510.71□□□□□ -0.692e-6■■□□□ 11.9
LIN28BQ6ZN17 APOC1-201ENST00000586638 425 ntTSL 3 BASIC10.71□□□□□ -0.692e-6■■□□□ 11.9
LIN28BQ6ZN17 CHID1-221ENST00000533056 752 ntTSL 310.31□□□□□ -0.762e-6■■□□□ 11.9
LIN28BQ6ZN17 OLA1-203ENST00000392560 711 ntTSL 59.95□□□□□ -0.822e-6■■□□□ 11.9
LIN28BQ6ZN17 EEA1-201ENST00000322349 9875 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.832e-6■■□□□ 11.9
LIN28BQ6ZN17 PIGS-207ENST00000492429 2658 ntTSL 29.57□□□□□ -0.884e-9■■□□□ 11.9
LIN28BQ6ZN17 INTS10-204ENST00000518799 457 ntTSL 59.24□□□□□ -0.932e-6■■□□□ 11.9
LIN28BQ6ZN17 APOC1-202ENST00000588750 689 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.972e-6■■□□□ 11.9
LIN28BQ6ZN17 INTS9-215ENST00000522363 2045 ntTSL 28.72□□□□□ -1.012e-6■■□□□ 11.9
LIN28BQ6ZN17 EXOC4-201ENST00000253861 4185 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.034e-9■■□□□ 11.9
LIN28BQ6ZN17 XPO5-207ENST00000455854 3629 ntTSL 28.38□□□□□ -1.072e-6■■□□□ 11.9
LIN28BQ6ZN17 INTS9-210ENST00000520983 1154 ntTSL 27.15□□□□□ -1.262e-6■■□□□ 11.9
LIN28BQ6ZN17 NUP98-215ENST00000529063 544 ntTSL 37.02□□□□□ -1.292e-6■■□□□ 11.9
LIN28BQ6ZN17 OLA1-208ENST00000462000 656 ntTSL 26.81□□□□□ -1.322e-6■■□□□ 11.9
LIN28BQ6ZN17 RFWD2-202ENST00000367666 2022 ntTSL 25.83□□□□□ -1.484e-9■■□□□ 11.9
LIN28BQ6ZN17 INTS9-218ENST00000523436 929 ntTSL 35.75□□□□□ -1.492e-6■■□□□ 11.9
LIN28BQ6ZN17 RFWD2-209ENST00000491600 773 ntTSL 55.49□□□□□ -1.534e-9■■□□□ 11.9
LIN28BQ6ZN17 THAP12-204ENST00000529901 6795 ntTSL 1 (best)4.86□□□□□ -1.632e-6■■□□□ 11.9
LIN28BQ6ZN17 INTS9-214ENST00000522074 718 ntTSL 34.57□□□□□ -1.682e-6■■□□□ 11.9
LIN28BQ6ZN17 CAND1-204ENST00000540319 2786 ntTSL 24.53□□□□□ -1.682e-6■■□□□ 11.9
LIN28BQ6ZN17 RFWD2-210ENST00000498306 617 ntTSL 53.91□□□□□ -1.784e-9■■□□□ 11.9
LIN28BQ6ZN17 INTS10-217ENST00000523846 704 ntTSL 33.82□□□□□ -1.82e-6■■□□□ 11.9
LIN28BQ6ZN17 OSBPL8-208ENST00000548485 684 ntTSL 23.55□□□□□ -1.842e-6■■□□□ 11.9
LIN28BQ6ZN17 CPSF3-205ENST00000489629 547 ntTSL 33.36□□□□□ -1.872e-6■■□□□ 11.9
Retrieved 100 of 21,972 protein–RNA pairs in 647 ms