Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 P4HB-206ENST00000471535 579 ntTSL 426.21■■□□□ 1.791e-73■■□□□ 12
LIN28BQ6ZN17 P4HB-205ENST00000467086 785 ntTSL 526.17■■□□□ 1.781e-73■■□□□ 12
LIN28BQ6ZN17 P4HB-219ENST00000574914 571 ntTSL 423.78■■□□□ 1.41e-73■■□□□ 12
LIN28BQ6ZN17 P4HB-224ENST00000576541 571 ntTSL 523.78■■□□□ 1.41e-73■■□□□ 12
LIN28BQ6ZN17 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.163e-22■■□□□ 12
LIN28BQ6ZN17 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC15.35■□□□□ 0.053e-22■■□□□ 12
LIN28BQ6ZN17 HLA-B-256ENST00000639848 1089 ntBASIC22.69■■□□□ 1.221e-7■■□□□ 12
LIN28BQ6ZN17 HLA-B-255ENST00000498007 1087 nt21.97■■□□□ 1.111e-7■■□□□ 12
LIN28BQ6ZN17 HLA-B-251ENST00000463574 588 nt14.28□□□□□ -0.121e-7■■□□□ 12
LIN28BQ6ZN17 EXO1-203ENST00000423131 950 ntTSL 519.18■□□□□ 0.667e-10■■□□□ 12
LIN28BQ6ZN17 EXO1-206ENST00000469419 754 ntTSL 311.74□□□□□ -0.537e-10■■□□□ 12
LIN28BQ6ZN17 EXO1-207ENST00000493702 783 ntTSL 510.55□□□□□ -0.727e-10■■□□□ 12
LIN28BQ6ZN17 EXO1-204ENST00000437497 593 ntTSL 35.26□□□□□ -1.577e-10■■□□□ 12
LIN28BQ6ZN17 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.352e-6■■□□□ 12
LIN28BQ6ZN17 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.65■□□□□ 0.262e-6■■□□□ 12
LIN28BQ6ZN17 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.242e-6■■□□□ 12
LIN28BQ6ZN17 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.122e-6■■□□□ 12
LIN28BQ6ZN17 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.022e-6■■□□□ 12
LIN28BQ6ZN17 CHN2-203ENST00000409350 539 ntTSL 414.78□□□□□ -0.042e-6■■□□□ 12
LIN28BQ6ZN17 ACTN1-211ENST00000553882 2636 ntTSL 214.25□□□□□ -0.132e-6■■□□□ 12
LIN28BQ6ZN17 CHN2-213ENST00000439384 578 ntTSL 513.84□□□□□ -0.192e-6■■□□□ 12
LIN28BQ6ZN17 CHN2-221ENST00000478128 459 ntTSL 413.16□□□□□ -0.32e-6■■□□□ 12
LIN28BQ6ZN17 ATP1B1-203ENST00000494797 718 ntTSL 212.57□□□□□ -0.44e-9■■□□□ 12
LIN28BQ6ZN17 C1GALT1-205ENST00000436587 6235 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.415e-12■■□□□ 12
LIN28BQ6ZN17 HEG1-202ENST00000477536 1054 ntTSL 512.3□□□□□ -0.442e-6■■□□□ 12
LIN28BQ6ZN17 HEXIM1-201ENST00000332499 3600 ntAPPRIS P1 BASIC12.12□□□□□ -0.472e-6■■□□□ 12
LIN28BQ6ZN17 CHN2-205ENST00000409964 547 ntTSL 411.99□□□□□ -0.492e-6■■□□□ 12
LIN28BQ6ZN17 CHN2-207ENST00000412536 575 ntTSL 411.21□□□□□ -0.612e-6■■□□□ 12
LIN28BQ6ZN17 CHN2-204ENST00000409922 740 ntTSL 211.11□□□□□ -0.632e-6■■□□□ 12
LIN28BQ6ZN17 CHN2-220ENST00000474070 754 ntTSL 511.11□□□□□ -0.632e-6■■□□□ 12
LIN28BQ6ZN17 CHN2-226ENST00000495789 725 ntTSL 1 (best) BASIC10.66□□□□□ -0.72e-6■■□□□ 12
LIN28BQ6ZN17 CHN2-224ENST00000491856 2578 ntTSL 210.46□□□□□ -0.732e-6■■□□□ 12
LIN28BQ6ZN17 CHN2-222ENST00000482820 498 ntTSL 510.01□□□□□ -0.812e-6■■□□□ 12
LIN28BQ6ZN17 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.165e-12■■□□□ 12
LIN28BQ6ZN17 MAVS-201ENST00000416600 11596 ntTSL 1 (best) BASIC7.44□□□□□ -1.222e-6■■□□□ 12
LIN28BQ6ZN17 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.262e-6■■□□□ 12
LIN28BQ6ZN17 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.392e-6■■□□□ 12
LIN28BQ6ZN17 SCN1A-213ENST00000636759 3606 ntTSL 56.15□□□□□ -1.432e-6■■□□□ 12
LIN28BQ6ZN17 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.472e-6■■□□□ 12
LIN28BQ6ZN17 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.82□□□□□ -1.482e-6■■□□□ 12
LIN28BQ6ZN17 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.512e-6■■□□□ 12
LIN28BQ6ZN17 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.53□□□□□ -1.522e-6■■□□□ 12
LIN28BQ6ZN17 SCN1A-212ENST00000636194 8508 ntTSL 55.24□□□□□ -1.572e-6■■□□□ 12
LIN28BQ6ZN17 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.582e-6■■□□□ 12
LIN28BQ6ZN17 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.04□□□□□ -1.62e-6■■□□□ 12
LIN28BQ6ZN17 KIAA1109-207ENST00000438707 5528 ntTSL 55.01□□□□□ -1.612e-6■■□□□ 12
LIN28BQ6ZN17 SCN1A-216ENST00000637968 4614 ntTSL 54.94□□□□□ -1.622e-6■■□□□ 12
LIN28BQ6ZN17 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.45□□□□□ -1.72e-6■■□□□ 12
LIN28BQ6ZN17 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.712e-6■■□□□ 12
LIN28BQ6ZN17 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.08□□□□□ -1.762e-6■■□□□ 12
LIN28BQ6ZN17 SCN1A-220ENST00000641603 12506 ntBASIC3.89□□□□□ -1.792e-6■■□□□ 12
LIN28BQ6ZN17 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.73□□□□□ -1.815e-12■■□□□ 12
LIN28BQ6ZN17 SCN1A-221ENST00000641996 12903 nt3.33□□□□□ -1.882e-6■■□□□ 12
LIN28BQ6ZN17 KIAA1109-204ENST00000419325 4967 ntTSL 1 (best)3.23□□□□□ -1.892e-6■■□□□ 12
LIN28BQ6ZN17 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.92e-6■■□□□ 12
LIN28BQ6ZN17 KIAA1109-205ENST00000421930 624 ntTSL 53.03□□□□□ -1.922e-6■■□□□ 12
LIN28BQ6ZN17 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.4□□□□□ -2.022e-6■■□□□ 12
LIN28BQ6ZN17 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.251e-9■■□□□ 12
LIN28BQ6ZN17 NARF-222ENST00000583908 430 ntTSL 310.96□□□□□ -0.655e-8■■□□□ 12
LIN28BQ6ZN17 OS9-222ENST00000552787 962 ntTSL 218.2■□□□□ 0.56e-11■■□□□ 12
LIN28BQ6ZN17 OS9-215ENST00000550699 553 ntTSL 316.84■□□□□ 0.296e-11■■□□□ 12
LIN28BQ6ZN17 OS9-209ENST00000547079 583 ntTSL 312.68□□□□□ -0.386e-11■■□□□ 12
LIN28BQ6ZN17 OS9-214ENST00000550438 635 ntTSL 210.56□□□□□ -0.726e-11■■□□□ 12
LIN28BQ6ZN17 SLC47A1-214ENST00000584348 603 ntTSL 310.89□□□□□ -0.673e-18■■□□□ 12
LIN28BQ6ZN17 TFG-205ENST00000479672 776 ntTSL 326.44■■□□□ 1.823e-8■■□□□ 12
LIN28BQ6ZN17 TFG-210ENST00000620299 1289 ntTSL 5 BASIC23.58■■□□□ 1.373e-8■■□□□ 12
LIN28BQ6ZN17 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.093e-8■■□□□ 12
LIN28BQ6ZN17 TFG-207ENST00000487505 913 ntTSL 319.81■□□□□ 0.763e-8■■□□□ 12
LIN28BQ6ZN17 TFG-203ENST00000463568 723 ntTSL 319.12■□□□□ 0.653e-8■■□□□ 12
LIN28BQ6ZN17 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC14.74□□□□□ -0.053e-8■■□□□ 12
LIN28BQ6ZN17 TFG-202ENST00000418917 1716 ntAPPRIS ALT1 TSL 3 BASIC13.9□□□□□ -0.183e-8■■□□□ 12
LIN28BQ6ZN17 TFG-204ENST00000476228 1783 ntAPPRIS ALT1 TSL 1 (best) BASIC9.96□□□□□ -0.823e-8■■□□□ 12
LIN28BQ6ZN17 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC4.2□□□□□ -1.743e-8■■□□□ 12
LIN28BQ6ZN17 DLAT-205ENST00000533297 2118 ntTSL 217.48■□□□□ 0.394e-6■■□□□ 12
LIN28BQ6ZN17 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.174e-9■■□□□ 12
LIN28BQ6ZN17 HDLBP-232ENST00000470482 624 ntTSL 213.41□□□□□ -0.262e-10■■□□□ 12
LIN28BQ6ZN17 HNRNPK-211ENST00000493362 868 ntTSL 25.15□□□□□ -1.595e-13■■□□□ 11.9
LIN28BQ6ZN17 PLOD1-207ENST00000481933 2339 ntTSL 210.19□□□□□ -0.782e-6■■□□□ 11.9
LIN28BQ6ZN17 THBS1-201ENST00000260356 7775 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.731e-6■■□□□ 11.9
LIN28BQ6ZN17 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.021e-8■■□□□ 11.9
LIN28BQ6ZN17 RBM12-202ENST00000374104 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.631e-8■■□□□ 11.9
LIN28BQ6ZN17 AMBP-203ENST00000540645 1356 ntTSL 213.93□□□□□ -0.183e-16■■□□□ 11.9
LIN28BQ6ZN17 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.431e-9■■□□□ 11.9
LIN28BQ6ZN17 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC6.93□□□□□ -1.31e-9■■□□□ 11.9
LIN28BQ6ZN17 UQCRB-206ENST00000519322 750 ntTSL 26.93□□□□□ -1.31e-9■■□□□ 11.9
LIN28BQ6ZN17 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC6.09□□□□□ -1.431e-9■■□□□ 11.9
LIN28BQ6ZN17 UQCRB-208ENST00000521948 997 ntTSL 26.06□□□□□ -1.441e-9■■□□□ 11.9
LIN28BQ6ZN17 UQCRB-205ENST00000518876 3968 ntTSL 1 (best)6.03□□□□□ -1.441e-9■■□□□ 11.9
LIN28BQ6ZN17 UQCRB-207ENST00000521036 982 ntTSL 25.81□□□□□ -1.481e-9■■□□□ 11.9
LIN28BQ6ZN17 UQCRB-203ENST00000517603 1041 ntTSL 1 (best)4.63□□□□□ -1.671e-9■■□□□ 11.9
LIN28BQ6ZN17 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.62□□□□□ -1.991e-9■■□□□ 11.9
LIN28BQ6ZN17 CALM2-205ENST00000460218 4502 ntTSL 1 (best)1.55□□□□□ -2.163e-7■■□□□ 11.9
LIN28BQ6ZN17 ZC3H7A-206ENST00000571405 1930 ntTSL 27.34□□□□□ -1.234e-6■■□□□ 11.9
LIN28BQ6ZN17 ZC3H7A-204ENST00000570918 1410 ntTSL 1 (best)6.94□□□□□ -1.34e-6■■□□□ 11.9
LIN28BQ6ZN17 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.45□□□□□ -1.384e-6■■□□□ 11.9
LIN28BQ6ZN17 STX16-210ENST00000458280 553 ntTSL 424.94■■□□□ 1.581e-6■■□□□ 11.9
LIN28BQ6ZN17 STX16-217ENST00000490700 661 ntTSL 318.33■□□□□ 0.521e-6■■□□□ 11.9
LIN28BQ6ZN17 STX16-208ENST00000412911 560 ntTSL 418.29■□□□□ 0.521e-6■■□□□ 11.9
LIN28BQ6ZN17 CNTROB-215ENST00000576922 1468 ntTSL 518.27■□□□□ 0.521e-6■■□□□ 11.9
LIN28BQ6ZN17 STX16-201ENST00000312283 785 ntTSL 318.09■□□□□ 0.491e-6■■□□□ 11.9
Retrieved 100 of 21,972 protein–RNA pairs in 466.4 ms