Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
DDX4Q9NQI0 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC28.4■■■□□ 2.14
DDX4Q9NQI0 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC28.39■■■□□ 2.14
DDX4Q9NQI0 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC28.39■■■□□ 2.14
DDX4Q9NQI0 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.14
DDX4Q9NQI0 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.14
DDX4Q9NQI0 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.13
DDX4Q9NQI0 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
DDX4Q9NQI0 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC28.38■■■□□ 2.13
DDX4Q9NQI0 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC28.38■■■□□ 2.13
DDX4Q9NQI0 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
DDX4Q9NQI0 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC28.38■■■□□ 2.13
DDX4Q9NQI0 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
DDX4Q9NQI0 AC021242.3-201ENST00000607598 1377 ntBASIC28.37■■■□□ 2.13
DDX4Q9NQI0 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC28.37■■■□□ 2.13
DDX4Q9NQI0 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC28.37■■■□□ 2.13
DDX4Q9NQI0 MIR4281-201ENST00000580852 62 ntBASIC28.37■■■□□ 2.13
DDX4Q9NQI0 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
DDX4Q9NQI0 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC28.37■■■□□ 2.13
DDX4Q9NQI0 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC28.36■■■□□ 2.13
DDX4Q9NQI0 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
DDX4Q9NQI0 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC28.36■■■□□ 2.13
DDX4Q9NQI0 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC28.36■■■□□ 2.13
DDX4Q9NQI0 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC28.36■■■□□ 2.13
DDX4Q9NQI0 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
DDX4Q9NQI0 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
DDX4Q9NQI0 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC28.35■■■□□ 2.13
DDX4Q9NQI0 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
DDX4Q9NQI0 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
DDX4Q9NQI0 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC28.35■■■□□ 2.13
DDX4Q9NQI0 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC28.35■■■□□ 2.13
DDX4Q9NQI0 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC28.35■■■□□ 2.13
DDX4Q9NQI0 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
DDX4Q9NQI0 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
DDX4Q9NQI0 PKM-203ENST00000389093 2279 ntTSL 5 BASIC28.35■■■□□ 2.13
DDX4Q9NQI0 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC28.34■■■□□ 2.13
DDX4Q9NQI0 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
DDX4Q9NQI0 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC28.34■■■□□ 2.13
DDX4Q9NQI0 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
DDX4Q9NQI0 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC28.34■■■□□ 2.13
DDX4Q9NQI0 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC28.34■■■□□ 2.13
DDX4Q9NQI0 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
DDX4Q9NQI0 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC28.34■■■□□ 2.13
DDX4Q9NQI0 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
DDX4Q9NQI0 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
DDX4Q9NQI0 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC28.33■■■□□ 2.13
DDX4Q9NQI0 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
DDX4Q9NQI0 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
DDX4Q9NQI0 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC28.32■■■□□ 2.12
DDX4Q9NQI0 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC28.32■■■□□ 2.12
DDX4Q9NQI0 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
DDX4Q9NQI0 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
DDX4Q9NQI0 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC28.32■■■□□ 2.12
DDX4Q9NQI0 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
DDX4Q9NQI0 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC28.31■■■□□ 2.12
DDX4Q9NQI0 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC28.31■■■□□ 2.12
DDX4Q9NQI0 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
DDX4Q9NQI0 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
DDX4Q9NQI0 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
DDX4Q9NQI0 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
DDX4Q9NQI0 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
DDX4Q9NQI0 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC28.3■■■□□ 2.12
DDX4Q9NQI0 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC28.3■■■□□ 2.12
DDX4Q9NQI0 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC28.3■■■□□ 2.12
DDX4Q9NQI0 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC28.3■■■□□ 2.12
DDX4Q9NQI0 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
DDX4Q9NQI0 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
DDX4Q9NQI0 TSPY9P-201ENST00000440215 945 ntBASIC28.29■■■□□ 2.12
DDX4Q9NQI0 TSPY11P-201ENST00000442607 1045 ntBASIC28.29■■■□□ 2.12
DDX4Q9NQI0 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
DDX4Q9NQI0 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
DDX4Q9NQI0 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC28.28■■■□□ 2.12
DDX4Q9NQI0 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
DDX4Q9NQI0 KRT16P3-201ENST00000439127 1283 ntBASIC28.28■■■□□ 2.12
DDX4Q9NQI0 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC28.28■■■□□ 2.12
DDX4Q9NQI0 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
DDX4Q9NQI0 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
DDX4Q9NQI0 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
DDX4Q9NQI0 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
DDX4Q9NQI0 ERN1-208ENST00000606895 2068 ntBASIC28.27■■■□□ 2.12
DDX4Q9NQI0 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC28.27■■■□□ 2.12
DDX4Q9NQI0 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC28.26■■■□□ 2.12
DDX4Q9NQI0 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
DDX4Q9NQI0 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
DDX4Q9NQI0 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
DDX4Q9NQI0 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
DDX4Q9NQI0 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC28.26■■■□□ 2.11
DDX4Q9NQI0 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
DDX4Q9NQI0 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
DDX4Q9NQI0 AC096887.2-201ENST00000623443 1957 ntBASIC28.25■■■□□ 2.11
DDX4Q9NQI0 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC28.25■■■□□ 2.11
DDX4Q9NQI0 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC28.25■■■□□ 2.11
DDX4Q9NQI0 AC092028.1-203ENST00000608262 953 ntBASIC28.25■■■□□ 2.11
DDX4Q9NQI0 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
DDX4Q9NQI0 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
DDX4Q9NQI0 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC28.25■■■□□ 2.11
DDX4Q9NQI0 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
DDX4Q9NQI0 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
DDX4Q9NQI0 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC28.24■■■□□ 2.11
DDX4Q9NQI0 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC28.24■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms