Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC30.27■■■□□ 2.44
Cpsf1Q9EPU4 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC30.27■■■□□ 2.44
Cpsf1Q9EPU4 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Cpsf1Q9EPU4 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
Cpsf1Q9EPU4 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC30.26■■■□□ 2.43
Cpsf1Q9EPU4 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC30.25■■■□□ 2.43
Cpsf1Q9EPU4 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Cpsf1Q9EPU4 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC30.25■■■□□ 2.43
Cpsf1Q9EPU4 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC30.24■■■□□ 2.43
Cpsf1Q9EPU4 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Cpsf1Q9EPU4 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Cpsf1Q9EPU4 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Cpsf1Q9EPU4 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC30.24■■■□□ 2.43
Cpsf1Q9EPU4 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Cpsf1Q9EPU4 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Cpsf1Q9EPU4 Gm11847-201ENSMUST00000125165 1119 ntBASIC30.23■■■□□ 2.43
Cpsf1Q9EPU4 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Cpsf1Q9EPU4 Gm5131-201ENSMUST00000212776 1238 ntBASIC30.23■■■□□ 2.43
Cpsf1Q9EPU4 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Cpsf1Q9EPU4 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC30.23■■■□□ 2.43
Cpsf1Q9EPU4 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
Cpsf1Q9EPU4 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC30.22■■■□□ 2.43
Cpsf1Q9EPU4 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC30.22■■■□□ 2.43
Cpsf1Q9EPU4 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC30.22■■■□□ 2.43
Cpsf1Q9EPU4 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
Cpsf1Q9EPU4 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
Cpsf1Q9EPU4 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
Cpsf1Q9EPU4 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
Cpsf1Q9EPU4 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC30.22■■■□□ 2.43
Cpsf1Q9EPU4 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Cpsf1Q9EPU4 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Cpsf1Q9EPU4 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC30.21■■■□□ 2.43
Cpsf1Q9EPU4 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC30.21■■■□□ 2.43
Cpsf1Q9EPU4 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC30.21■■■□□ 2.43
Cpsf1Q9EPU4 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Cpsf1Q9EPU4 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC30.2■■■□□ 2.43
Cpsf1Q9EPU4 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
Cpsf1Q9EPU4 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
Cpsf1Q9EPU4 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Cpsf1Q9EPU4 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Cpsf1Q9EPU4 Gm8093-201ENSMUST00000128935 1892 ntBASIC30.19■■■□□ 2.42
Cpsf1Q9EPU4 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
Cpsf1Q9EPU4 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
Cpsf1Q9EPU4 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC30.19■■■□□ 2.42
Cpsf1Q9EPU4 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Cpsf1Q9EPU4 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Cpsf1Q9EPU4 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Cpsf1Q9EPU4 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Cpsf1Q9EPU4 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC30.18■■■□□ 2.42
Cpsf1Q9EPU4 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
Cpsf1Q9EPU4 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
Cpsf1Q9EPU4 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC30.15■■■□□ 2.42
Cpsf1Q9EPU4 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC30.15■■■□□ 2.42
Cpsf1Q9EPU4 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC30.15■■■□□ 2.42
Cpsf1Q9EPU4 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Cpsf1Q9EPU4 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Cpsf1Q9EPU4 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC30.15■■■□□ 2.42
Cpsf1Q9EPU4 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
Cpsf1Q9EPU4 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Cpsf1Q9EPU4 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Cpsf1Q9EPU4 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
Cpsf1Q9EPU4 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC30.14■■■□□ 2.42
Cpsf1Q9EPU4 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Cpsf1Q9EPU4 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Cpsf1Q9EPU4 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Cpsf1Q9EPU4 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.41
Cpsf1Q9EPU4 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
Cpsf1Q9EPU4 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
Cpsf1Q9EPU4 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Cpsf1Q9EPU4 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC30.13■■■□□ 2.41
Cpsf1Q9EPU4 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Cpsf1Q9EPU4 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Cpsf1Q9EPU4 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC30.12■■■□□ 2.41
Cpsf1Q9EPU4 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Cpsf1Q9EPU4 AC115037.1-201ENSMUST00000223391 2173 ntBASIC30.1■■■□□ 2.41
Cpsf1Q9EPU4 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
Cpsf1Q9EPU4 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC30.1■■■□□ 2.41
Cpsf1Q9EPU4 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC30.1■■■□□ 2.41
Cpsf1Q9EPU4 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC30.1■■■□□ 2.41
Cpsf1Q9EPU4 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC30.09■■■□□ 2.41
Cpsf1Q9EPU4 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Cpsf1Q9EPU4 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
Cpsf1Q9EPU4 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC30.09■■■□□ 2.41
Cpsf1Q9EPU4 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Cpsf1Q9EPU4 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.09■■■□□ 2.41
Cpsf1Q9EPU4 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Cpsf1Q9EPU4 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Cpsf1Q9EPU4 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC30.07■■■□□ 2.4
Cpsf1Q9EPU4 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC30.07■■■□□ 2.4
Cpsf1Q9EPU4 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Cpsf1Q9EPU4 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC30.06■■■□□ 2.4
Cpsf1Q9EPU4 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC30.06■■■□□ 2.4
Cpsf1Q9EPU4 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC30.06■■■□□ 2.4
Cpsf1Q9EPU4 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC30.06■■■□□ 2.4
Cpsf1Q9EPU4 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Cpsf1Q9EPU4 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Cpsf1Q9EPU4 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC30.05■■■□□ 2.4
Cpsf1Q9EPU4 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Cpsf1Q9EPU4 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC30.05■■■□□ 2.4
Cpsf1Q9EPU4 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC30.05■■■□□ 2.4
Retrieved 100 of 76,532 protein–RNA pairs in 1004.1 ms