Protein–RNA interactions for Protein: Q9CZN7

Shmt2, Serine hydroxymethyltransferase, mousemouse

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt2Q9CZN7 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Shmt2Q9CZN7 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shmt2Q9CZN7 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Shmt2Q9CZN7 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shmt2Q9CZN7 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shmt2Q9CZN7 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shmt2Q9CZN7 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.42■□□□□ 0.86
Shmt2Q9CZN7 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Shmt2Q9CZN7 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Shmt2Q9CZN7 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shmt2Q9CZN7 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shmt2Q9CZN7 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.41■□□□□ 0.86
Shmt2Q9CZN7 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shmt2Q9CZN7 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shmt2Q9CZN7 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shmt2Q9CZN7 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shmt2Q9CZN7 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Shmt2Q9CZN7 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Shmt2Q9CZN7 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Shmt2Q9CZN7 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.39■□□□□ 0.86
Shmt2Q9CZN7 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Shmt2Q9CZN7 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Shmt2Q9CZN7 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.39■□□□□ 0.85
Shmt2Q9CZN7 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Shmt2Q9CZN7 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Shmt2Q9CZN7 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
Shmt2Q9CZN7 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Shmt2Q9CZN7 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.39■□□□□ 0.85
Shmt2Q9CZN7 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Shmt2Q9CZN7 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.85
Shmt2Q9CZN7 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt2Q9CZN7 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt2Q9CZN7 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt2Q9CZN7 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt2Q9CZN7 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt2Q9CZN7 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shmt2Q9CZN7 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Shmt2Q9CZN7 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Shmt2Q9CZN7 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Shmt2Q9CZN7 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Shmt2Q9CZN7 AC153524.1-201ENSMUST00000220436 1935 ntBASIC20.36■□□□□ 0.85
Shmt2Q9CZN7 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Shmt2Q9CZN7 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Shmt2Q9CZN7 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Shmt2Q9CZN7 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Shmt2Q9CZN7 AC115037.1-201ENSMUST00000223391 2173 ntBASIC20.35■□□□□ 0.85
Shmt2Q9CZN7 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Shmt2Q9CZN7 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Shmt2Q9CZN7 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Shmt2Q9CZN7 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shmt2Q9CZN7 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shmt2Q9CZN7 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shmt2Q9CZN7 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Shmt2Q9CZN7 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Shmt2Q9CZN7 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Shmt2Q9CZN7 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Shmt2Q9CZN7 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Shmt2Q9CZN7 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Shmt2Q9CZN7 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Shmt2Q9CZN7 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Shmt2Q9CZN7 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Shmt2Q9CZN7 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.32■□□□□ 0.84
Shmt2Q9CZN7 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Shmt2Q9CZN7 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Shmt2Q9CZN7 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Shmt2Q9CZN7 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Shmt2Q9CZN7 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
Shmt2Q9CZN7 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Shmt2Q9CZN7 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Shmt2Q9CZN7 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Shmt2Q9CZN7 Gm37415-201ENSMUST00000192265 2054 ntBASIC20.31■□□□□ 0.84
Shmt2Q9CZN7 Gm10420-201ENSMUST00000121713 882 ntBASIC20.31■□□□□ 0.84
Shmt2Q9CZN7 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shmt2Q9CZN7 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Shmt2Q9CZN7 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Shmt2Q9CZN7 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shmt2Q9CZN7 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shmt2Q9CZN7 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Shmt2Q9CZN7 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Shmt2Q9CZN7 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Shmt2Q9CZN7 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.3■□□□□ 0.84
Shmt2Q9CZN7 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Shmt2Q9CZN7 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Shmt2Q9CZN7 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Shmt2Q9CZN7 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Shmt2Q9CZN7 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC20.29■□□□□ 0.84
Shmt2Q9CZN7 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Shmt2Q9CZN7 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Shmt2Q9CZN7 Gm28731-201ENSMUST00000185564 1569 ntBASIC20.29■□□□□ 0.84
Shmt2Q9CZN7 Hsf1-207ENSMUST00000228371 2102 ntBASIC20.29■□□□□ 0.84
Shmt2Q9CZN7 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shmt2Q9CZN7 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
Shmt2Q9CZN7 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shmt2Q9CZN7 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.28■□□□□ 0.84
Shmt2Q9CZN7 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Shmt2Q9CZN7 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shmt2Q9CZN7 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shmt2Q9CZN7 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shmt2Q9CZN7 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.27■□□□□ 0.84
Shmt2Q9CZN7 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 88.2 ms