Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx28Q9CWT6 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Ddx28Q9CWT6 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Ddx28Q9CWT6 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC19.86■□□□□ 0.77
Ddx28Q9CWT6 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx28Q9CWT6 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx28Q9CWT6 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC19.85■□□□□ 0.77
Ddx28Q9CWT6 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Ddx28Q9CWT6 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx28Q9CWT6 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx28Q9CWT6 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Ddx28Q9CWT6 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx28Q9CWT6 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx28Q9CWT6 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx28Q9CWT6 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx28Q9CWT6 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ddx28Q9CWT6 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddx28Q9CWT6 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddx28Q9CWT6 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddx28Q9CWT6 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Ddx28Q9CWT6 Gm28731-201ENSMUST00000185564 1569 ntBASIC19.84■□□□□ 0.77
Ddx28Q9CWT6 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Ddx28Q9CWT6 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddx28Q9CWT6 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddx28Q9CWT6 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Ddx28Q9CWT6 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ddx28Q9CWT6 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Ddx28Q9CWT6 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Ddx28Q9CWT6 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Ddx28Q9CWT6 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Ddx28Q9CWT6 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ddx28Q9CWT6 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddx28Q9CWT6 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddx28Q9CWT6 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC19.82■□□□□ 0.76
Ddx28Q9CWT6 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19.82■□□□□ 0.76
Ddx28Q9CWT6 Gm44428-201ENSMUST00000204474 874 ntBASIC19.82■□□□□ 0.76
Ddx28Q9CWT6 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ddx28Q9CWT6 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Ddx28Q9CWT6 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ddx28Q9CWT6 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Ddx28Q9CWT6 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC19.81■□□□□ 0.76
Ddx28Q9CWT6 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC19.81■□□□□ 0.76
Ddx28Q9CWT6 Gm16437-201ENSMUST00000025669 507 ntBASIC19.81■□□□□ 0.76
Ddx28Q9CWT6 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Ddx28Q9CWT6 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Ddx28Q9CWT6 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Ddx28Q9CWT6 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ddx28Q9CWT6 Gm11175-201ENSMUST00000116172 543 ntBASIC19.8■□□□□ 0.76
Ddx28Q9CWT6 Mir6538-201ENSMUST00000183713 110 ntBASIC19.8■□□□□ 0.76
Ddx28Q9CWT6 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ddx28Q9CWT6 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ddx28Q9CWT6 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ddx28Q9CWT6 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Ddx28Q9CWT6 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Ddx28Q9CWT6 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ddx28Q9CWT6 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx28Q9CWT6 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC19.79■□□□□ 0.76
Ddx28Q9CWT6 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx28Q9CWT6 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx28Q9CWT6 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx28Q9CWT6 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC19.79■□□□□ 0.76
Ddx28Q9CWT6 Gm11687-201ENSMUST00000118911 886 ntBASIC19.79■□□□□ 0.76
Ddx28Q9CWT6 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx28Q9CWT6 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx28Q9CWT6 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx28Q9CWT6 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx28Q9CWT6 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC19.78■□□□□ 0.76
Ddx28Q9CWT6 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx28Q9CWT6 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Ddx28Q9CWT6 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx28Q9CWT6 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx28Q9CWT6 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx28Q9CWT6 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx28Q9CWT6 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx28Q9CWT6 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx28Q9CWT6 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Ddx28Q9CWT6 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx28Q9CWT6 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.75
Ddx28Q9CWT6 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Ddx28Q9CWT6 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx28Q9CWT6 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx28Q9CWT6 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx28Q9CWT6 Gm26766-202ENSMUST00000227544 2347 ntBASIC19.75■□□□□ 0.75
Ddx28Q9CWT6 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC19.75■□□□□ 0.75
Ddx28Q9CWT6 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx28Q9CWT6 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx28Q9CWT6 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Ddx28Q9CWT6 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Ddx28Q9CWT6 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx28Q9CWT6 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx28Q9CWT6 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC19.74■□□□□ 0.75
Ddx28Q9CWT6 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Ddx28Q9CWT6 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx28Q9CWT6 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx28Q9CWT6 AC153524.1-201ENSMUST00000220436 1935 ntBASIC19.73■□□□□ 0.75
Ddx28Q9CWT6 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC19.73■□□□□ 0.75
Ddx28Q9CWT6 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddx28Q9CWT6 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC19.72■□□□□ 0.75
Ddx28Q9CWT6 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC19.72■□□□□ 0.75
Ddx28Q9CWT6 AC151971.4-201ENSMUST00000214717 704 ntBASIC19.72■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms