Protein–RNA interactions for Protein: Q99M85

Scrt1, Transcriptional repressor scratch 1, mousemouse

Predictions only

Length 348 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scrt1Q99M85 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Scrt1Q99M85 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Scrt1Q99M85 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC18.78■□□□□ 0.6
Scrt1Q99M85 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scrt1Q99M85 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC18.77■□□□□ 0.6
Scrt1Q99M85 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Scrt1Q99M85 Gm16464-201ENSMUST00000117815 1095 ntBASIC18.77■□□□□ 0.6
Scrt1Q99M85 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC18.77■□□□□ 0.6
Scrt1Q99M85 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Scrt1Q99M85 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Scrt1Q99M85 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Scrt1Q99M85 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Scrt1Q99M85 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Scrt1Q99M85 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Scrt1Q99M85 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC18.76■□□□□ 0.59
Scrt1Q99M85 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC18.76■□□□□ 0.59
Scrt1Q99M85 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC18.76■□□□□ 0.59
Scrt1Q99M85 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Scrt1Q99M85 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC18.75■□□□□ 0.59
Scrt1Q99M85 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Scrt1Q99M85 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Scrt1Q99M85 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC18.75■□□□□ 0.59
Scrt1Q99M85 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Scrt1Q99M85 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC18.74■□□□□ 0.59
Scrt1Q99M85 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scrt1Q99M85 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scrt1Q99M85 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scrt1Q99M85 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scrt1Q99M85 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scrt1Q99M85 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC18.74■□□□□ 0.59
Scrt1Q99M85 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scrt1Q99M85 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scrt1Q99M85 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scrt1Q99M85 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scrt1Q99M85 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
Scrt1Q99M85 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scrt1Q99M85 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scrt1Q99M85 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scrt1Q99M85 H3f3aos-201ENSMUST00000097448 2905 ntBASIC18.73■□□□□ 0.59
Scrt1Q99M85 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC18.73■□□□□ 0.59
Scrt1Q99M85 Gm5297-201ENSMUST00000198555 1171 ntBASIC18.73■□□□□ 0.59
Scrt1Q99M85 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scrt1Q99M85 Gm6277-202ENSMUST00000224036 2779 ntBASIC18.72■□□□□ 0.59
Scrt1Q99M85 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scrt1Q99M85 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC18.72■□□□□ 0.59
Scrt1Q99M85 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scrt1Q99M85 Gm22238-201ENSMUST00000175222 88 ntBASIC18.72■□□□□ 0.59
Scrt1Q99M85 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC18.72■□□□□ 0.59
Scrt1Q99M85 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scrt1Q99M85 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scrt1Q99M85 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scrt1Q99M85 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scrt1Q99M85 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Scrt1Q99M85 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scrt1Q99M85 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scrt1Q99M85 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scrt1Q99M85 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC18.71■□□□□ 0.59
Scrt1Q99M85 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC18.71■□□□□ 0.59
Scrt1Q99M85 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scrt1Q99M85 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scrt1Q99M85 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Scrt1Q99M85 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scrt1Q99M85 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Scrt1Q99M85 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Scrt1Q99M85 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Scrt1Q99M85 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Scrt1Q99M85 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scrt1Q99M85 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Scrt1Q99M85 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scrt1Q99M85 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scrt1Q99M85 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Scrt1Q99M85 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scrt1Q99M85 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scrt1Q99M85 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC18.69■□□□□ 0.58
Scrt1Q99M85 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC18.69■□□□□ 0.58
Scrt1Q99M85 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scrt1Q99M85 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scrt1Q99M85 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scrt1Q99M85 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scrt1Q99M85 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Scrt1Q99M85 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Scrt1Q99M85 Gm7199-201ENSMUST00000118327 1485 ntBASIC18.68■□□□□ 0.58
Scrt1Q99M85 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Scrt1Q99M85 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC18.68■□□□□ 0.58
Scrt1Q99M85 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Scrt1Q99M85 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Scrt1Q99M85 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Scrt1Q99M85 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC18.67■□□□□ 0.58
Scrt1Q99M85 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Scrt1Q99M85 AC140930.3-201ENSMUST00000222935 274 ntBASIC18.66■□□□□ 0.58
Scrt1Q99M85 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Scrt1Q99M85 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Scrt1Q99M85 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Scrt1Q99M85 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Scrt1Q99M85 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Scrt1Q99M85 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Scrt1Q99M85 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Scrt1Q99M85 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Scrt1Q99M85 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Scrt1Q99M85 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 63.4 ms