Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
Col28a1Q2UY11 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Col28a1Q2UY11 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Col28a1Q2UY11 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.71■□□□□ 0.91
Col28a1Q2UY11 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC20.71■□□□□ 0.91
Col28a1Q2UY11 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.71■□□□□ 0.91
Col28a1Q2UY11 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col28a1Q2UY11 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Col28a1Q2UY11 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col28a1Q2UY11 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Col28a1Q2UY11 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Col28a1Q2UY11 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col28a1Q2UY11 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col28a1Q2UY11 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC20.7■□□□□ 0.9
Col28a1Q2UY11 Pkd1-207ENSMUST00000228550 1050 ntBASIC20.7■□□□□ 0.9
Col28a1Q2UY11 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col28a1Q2UY11 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col28a1Q2UY11 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.69■□□□□ 0.9
Col28a1Q2UY11 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Col28a1Q2UY11 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col28a1Q2UY11 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col28a1Q2UY11 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Col28a1Q2UY11 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col28a1Q2UY11 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col28a1Q2UY11 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC20.68■□□□□ 0.9
Col28a1Q2UY11 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Col28a1Q2UY11 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col28a1Q2UY11 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Col28a1Q2UY11 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col28a1Q2UY11 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Col28a1Q2UY11 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col28a1Q2UY11 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col28a1Q2UY11 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
Col28a1Q2UY11 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col28a1Q2UY11 Gm13889-201ENSMUST00000099689 1386 ntBASIC20.67■□□□□ 0.9
Col28a1Q2UY11 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col28a1Q2UY11 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col28a1Q2UY11 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col28a1Q2UY11 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.66■□□□□ 0.9
Col28a1Q2UY11 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col28a1Q2UY11 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Col28a1Q2UY11 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col28a1Q2UY11 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col28a1Q2UY11 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col28a1Q2UY11 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC20.65■□□□□ 0.9
Col28a1Q2UY11 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Col28a1Q2UY11 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.65■□□□□ 0.9
Col28a1Q2UY11 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.65■□□□□ 0.9
Col28a1Q2UY11 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Col28a1Q2UY11 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col28a1Q2UY11 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col28a1Q2UY11 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col28a1Q2UY11 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Col28a1Q2UY11 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC20.64■□□□□ 0.89
Col28a1Q2UY11 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col28a1Q2UY11 Mir3960-201ENSMUST00000198213 73 ntBASIC20.64■□□□□ 0.89
Col28a1Q2UY11 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Col28a1Q2UY11 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC20.64■□□□□ 0.89
Col28a1Q2UY11 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col28a1Q2UY11 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.64■□□□□ 0.89
Col28a1Q2UY11 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Col28a1Q2UY11 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col28a1Q2UY11 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col28a1Q2UY11 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col28a1Q2UY11 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Col28a1Q2UY11 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col28a1Q2UY11 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Col28a1Q2UY11 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col28a1Q2UY11 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Col28a1Q2UY11 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col28a1Q2UY11 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col28a1Q2UY11 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col28a1Q2UY11 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col28a1Q2UY11 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col28a1Q2UY11 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col28a1Q2UY11 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC20.61■□□□□ 0.89
Col28a1Q2UY11 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC20.61■□□□□ 0.89
Col28a1Q2UY11 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col28a1Q2UY11 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col28a1Q2UY11 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col28a1Q2UY11 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col28a1Q2UY11 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col28a1Q2UY11 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col28a1Q2UY11 Notumos-201ENSMUST00000151998 2659 ntBASIC20.61■□□□□ 0.89
Col28a1Q2UY11 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col28a1Q2UY11 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Col28a1Q2UY11 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.6■□□□□ 0.89
Col28a1Q2UY11 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col28a1Q2UY11 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col28a1Q2UY11 Gm27502-201ENSMUST00000183495 199 ntBASIC20.6■□□□□ 0.89
Col28a1Q2UY11 Gm45364-201ENSMUST00000210883 159 ntBASIC20.6■□□□□ 0.89
Col28a1Q2UY11 AC153911.1-201ENSMUST00000220378 758 ntBASIC20.6■□□□□ 0.89
Col28a1Q2UY11 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col28a1Q2UY11 Hsf1-207ENSMUST00000228371 2102 ntBASIC20.6■□□□□ 0.89
Col28a1Q2UY11 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC20.59■□□□□ 0.89
Col28a1Q2UY11 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col28a1Q2UY11 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col28a1Q2UY11 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
Col28a1Q2UY11 Gm9812-201ENSMUST00000061934 968 ntBASIC20.59■□□□□ 0.89
Col28a1Q2UY11 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 89.3 ms