Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 ST7-AS1-201ENST00000456775 1889 ntBASIC15.11■□□□□ 0.01
HSPG2P98160 CD72-202ENST00000378430 585 ntTSL 3 BASIC15.11■□□□□ 0.01
HSPG2P98160 TFPT-201ENST00000391757 774 ntTSL 5 BASIC15.11■□□□□ 0.01
HSPG2P98160 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
HSPG2P98160 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC15.11■□□□□ 0.01
HSPG2P98160 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
HSPG2P98160 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC15.11■□□□□ 0.01
HSPG2P98160 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
HSPG2P98160 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC15.1■□□□□ 0.01
HSPG2P98160 EDA-201ENST00000338901 1233 ntBASIC15.1■□□□□ 0.01
HSPG2P98160 AK3-203ENST00000447596 705 ntTSL 2 BASIC15.1■□□□□ 0.01
HSPG2P98160 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HSPG2P98160 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC15.1■□□□□ 0.01
HSPG2P98160 EXOG-217ENST00000630638 197 ntTSL 5 BASIC15.1■□□□□ 0.01
HSPG2P98160 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC15.1■□□□□ 0.01
HSPG2P98160 AL136162.1-201ENST00000607711 1078 ntBASIC15.1■□□□□ 0.01
HSPG2P98160 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HSPG2P98160 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
HSPG2P98160 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
HSPG2P98160 AC022517.1-201ENST00000592429 346 ntBASIC15.1■□□□□ 0.01
HSPG2P98160 IKBKGP1-201ENST00000612193 1073 ntBASIC15.1■□□□□ 0.01
HSPG2P98160 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HSPG2P98160 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HSPG2P98160 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HSPG2P98160 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC15.09■□□□□ 0.01
HSPG2P98160 RBM38-205ENST00000440234 686 ntTSL 2 BASIC15.09■□□□□ 0.01
HSPG2P98160 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HSPG2P98160 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
HSPG2P98160 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
HSPG2P98160 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC15.08■□□□□ 0.01
HSPG2P98160 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HSPG2P98160 AC092437.1-201ENST00000624794 1048 ntBASIC15.08■□□□□ 0
HSPG2P98160 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
HSPG2P98160 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HSPG2P98160 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC15.08■□□□□ 0
HSPG2P98160 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC15.08■□□□□ 0
HSPG2P98160 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC15.08■□□□□ 0
HSPG2P98160 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
HSPG2P98160 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
HSPG2P98160 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
HSPG2P98160 MAG-206ENST00000597035 542 ntTSL 4 BASIC15.07■□□□□ 0
HSPG2P98160 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
HSPG2P98160 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
HSPG2P98160 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC15.07■□□□□ 0
HSPG2P98160 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC15.07■□□□□ 0
HSPG2P98160 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
HSPG2P98160 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
HSPG2P98160 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC15.07■□□□□ 0
HSPG2P98160 AC091305.1-201ENST00000479476 895 ntBASIC15.06■□□□□ 0
HSPG2P98160 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HSPG2P98160 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC15.06■□□□□ 0
HSPG2P98160 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC15.06■□□□□ 0
HSPG2P98160 ID1-201ENST00000376105 1233 ntBASIC15.06■□□□□ 0
HSPG2P98160 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC15.06■□□□□ 0
HSPG2P98160 AC011551.1-201ENST00000614101 683 ntBASIC15.06■□□□□ 0
HSPG2P98160 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC15.06■□□□□ 0
HSPG2P98160 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC15.06■□□□□ 0
HSPG2P98160 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HSPG2P98160 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC15.06■□□□□ 0
HSPG2P98160 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HSPG2P98160 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC15.05■□□□□ 0
HSPG2P98160 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC15.05■□□□□ 0
HSPG2P98160 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC15.05■□□□□ -0
HSPG2P98160 STOX2-205ENST00000513034 807 ntTSL 3 BASIC15.05■□□□□ -0
HSPG2P98160 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC15.05■□□□□ -0
HSPG2P98160 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
HSPG2P98160 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
HSPG2P98160 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HSPG2P98160 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC15.05■□□□□ -0
HSPG2P98160 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC15.04■□□□□ -0
HSPG2P98160 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC15.04■□□□□ -0
HSPG2P98160 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HSPG2P98160 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC15.04■□□□□ -0
HSPG2P98160 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HSPG2P98160 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HSPG2P98160 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC15.04■□□□□ -0
HSPG2P98160 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HSPG2P98160 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HSPG2P98160 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC15.04■□□□□ -0
HSPG2P98160 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC15.04■□□□□ -0
HSPG2P98160 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
HSPG2P98160 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC15.03■□□□□ -0
HSPG2P98160 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC15.03■□□□□ -0
HSPG2P98160 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HSPG2P98160 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
HSPG2P98160 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC15.03■□□□□ -0
HSPG2P98160 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC15.03■□□□□ -0
HSPG2P98160 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC15.03■□□□□ -0
HSPG2P98160 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC15.03■□□□□ -0
HSPG2P98160 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC15.03■□□□□ -0
HSPG2P98160 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC15.03■□□□□ -0
HSPG2P98160 GRAMD4P4-201ENST00000613563 1115 ntBASIC15.03■□□□□ -0
HSPG2P98160 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
HSPG2P98160 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HSPG2P98160 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HSPG2P98160 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC15.02■□□□□ -0
HSPG2P98160 AL139393.2-201ENST00000608721 2025 ntBASIC15.02□□□□□ -0.01
HSPG2P98160 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC15.01□□□□□ -0.01
HSPG2P98160 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
HSPG2P98160 CA15P2-201ENST00000611168 834 ntBASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 154.2 ms