Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 KRT18P24-201ENST00000344739 1156 ntBASIC26.3■■□□□ 1.8
CLCN3P51790 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC26.3■■□□□ 1.8
CLCN3P51790 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC26.3■■□□□ 1.8
CLCN3P51790 THA1P-201ENST00000590384 1145 ntBASIC26.3■■□□□ 1.8
CLCN3P51790 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC26.3■■□□□ 1.8
CLCN3P51790 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CLCN3P51790 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC26.3■■□□□ 1.8
CLCN3P51790 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC26.3■■□□□ 1.8
CLCN3P51790 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC26.29■■□□□ 1.8
CLCN3P51790 AC096887.2-201ENST00000623443 1957 ntBASIC26.29■■□□□ 1.8
CLCN3P51790 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
CLCN3P51790 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC26.29■■□□□ 1.8
CLCN3P51790 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CLCN3P51790 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC26.28■■□□□ 1.8
CLCN3P51790 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CLCN3P51790 AL592295.1-201ENST00000400984 884 ntBASIC26.28■■□□□ 1.8
CLCN3P51790 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CLCN3P51790 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
CLCN3P51790 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLCN3P51790 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC26.28■■□□□ 1.8
CLCN3P51790 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLCN3P51790 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLCN3P51790 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLCN3P51790 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLCN3P51790 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CLCN3P51790 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
CLCN3P51790 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC26.27■■□□□ 1.8
CLCN3P51790 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC26.27■■□□□ 1.8
CLCN3P51790 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC26.27■■□□□ 1.8
CLCN3P51790 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC26.27■■□□□ 1.8
CLCN3P51790 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
CLCN3P51790 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC26.26■■□□□ 1.79
CLCN3P51790 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CLCN3P51790 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
CLCN3P51790 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CLCN3P51790 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLCN3P51790 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLCN3P51790 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLCN3P51790 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CLCN3P51790 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLCN3P51790 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLCN3P51790 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CLCN3P51790 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLCN3P51790 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLCN3P51790 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC26.25■■□□□ 1.79
CLCN3P51790 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC26.24■■□□□ 1.79
CLCN3P51790 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CLCN3P51790 Z92544.1-202ENST00000571933 1220 ntBASIC26.24■■□□□ 1.79
CLCN3P51790 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC26.24■■□□□ 1.79
CLCN3P51790 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLCN3P51790 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CLCN3P51790 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC26.23■■□□□ 1.79
CLCN3P51790 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC26.23■■□□□ 1.79
CLCN3P51790 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC26.23■■□□□ 1.79
CLCN3P51790 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLCN3P51790 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CLCN3P51790 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CLCN3P51790 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC26.22■■□□□ 1.79
CLCN3P51790 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CLCN3P51790 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CLCN3P51790 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
CLCN3P51790 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CLCN3P51790 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CLCN3P51790 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CLCN3P51790 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC26.21■■□□□ 1.79
CLCN3P51790 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC26.2■■□□□ 1.79
CLCN3P51790 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CLCN3P51790 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CLCN3P51790 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC26.2■■□□□ 1.78
CLCN3P51790 BX664725.1-201ENST00000438252 379 ntBASIC26.2■■□□□ 1.78
CLCN3P51790 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.78
CLCN3P51790 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CLCN3P51790 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CLCN3P51790 AC010501.1-201ENST00000606270 1962 ntBASIC26.19■■□□□ 1.78
CLCN3P51790 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC26.19■■□□□ 1.78
CLCN3P51790 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CLCN3P51790 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC26.19■■□□□ 1.78
CLCN3P51790 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CLCN3P51790 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CLCN3P51790 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC26.18■■□□□ 1.78
CLCN3P51790 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
CLCN3P51790 CREM-229ENST00000474362 1030 ntTSL 2 BASIC26.18■■□□□ 1.78
CLCN3P51790 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CLCN3P51790 KRT125P-201ENST00000546827 989 ntBASIC26.18■■□□□ 1.78
CLCN3P51790 AC092803.2-201ENST00000564287 1899 ntBASIC26.18■■□□□ 1.78
CLCN3P51790 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC26.18■■□□□ 1.78
CLCN3P51790 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
CLCN3P51790 MIR4281-201ENST00000580852 62 ntBASIC26.17■■□□□ 1.78
CLCN3P51790 MIR4787-201ENST00000607364 84 ntBASIC26.17■■□□□ 1.78
CLCN3P51790 FOXO3B-201ENST00000395675 1928 ntBASIC26.17■■□□□ 1.78
CLCN3P51790 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC26.17■■□□□ 1.78
CLCN3P51790 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.17■■□□□ 1.78
CLCN3P51790 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CLCN3P51790 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CLCN3P51790 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CLCN3P51790 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CLCN3P51790 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
CLCN3P51790 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC26.16■■□□□ 1.78
CLCN3P51790 AL356441.2-201ENST00000443009 864 ntBASIC26.16■■□□□ 1.78
CLCN3P51790 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms