Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 STOX2-205ENST00000513034 807 ntTSL 3 BASIC10.87□□□□□ -0.67
USH2AO75445 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
USH2AO75445 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
USH2AO75445 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
USH2AO75445 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
USH2AO75445 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC10.86□□□□□ -0.67
USH2AO75445 MAG-206ENST00000597035 542 ntTSL 4 BASIC10.86□□□□□ -0.67
USH2AO75445 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
USH2AO75445 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
USH2AO75445 ASB1-202ENST00000409297 878 ntTSL 5 BASIC10.86□□□□□ -0.67
USH2AO75445 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC10.86□□□□□ -0.67
USH2AO75445 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
USH2AO75445 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC10.86□□□□□ -0.67
USH2AO75445 HACD1-201ENST00000326961 773 ntTSL 2 BASIC10.86□□□□□ -0.67
USH2AO75445 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC10.86□□□□□ -0.67
USH2AO75445 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC10.86□□□□□ -0.67
USH2AO75445 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
USH2AO75445 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
USH2AO75445 CD72-202ENST00000378430 585 ntTSL 3 BASIC10.85□□□□□ -0.67
USH2AO75445 SLC47A1P1-202ENST00000449666 945 ntBASIC10.85□□□□□ -0.67
USH2AO75445 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC10.85□□□□□ -0.67
USH2AO75445 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
USH2AO75445 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
USH2AO75445 AC034268.1-201ENST00000441047 882 ntBASIC10.84□□□□□ -0.67
USH2AO75445 AK3-203ENST00000447596 705 ntTSL 2 BASIC10.84□□□□□ -0.67
USH2AO75445 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC10.84□□□□□ -0.67
USH2AO75445 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC10.84□□□□□ -0.67
USH2AO75445 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
USH2AO75445 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
USH2AO75445 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
USH2AO75445 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
USH2AO75445 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
USH2AO75445 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
USH2AO75445 AC091305.1-201ENST00000479476 895 ntBASIC10.84□□□□□ -0.67
USH2AO75445 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC10.84□□□□□ -0.67
USH2AO75445 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
USH2AO75445 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC10.84□□□□□ -0.67
USH2AO75445 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
USH2AO75445 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC10.84□□□□□ -0.67
USH2AO75445 AL031602.1-201ENST00000633169 911 ntBASIC10.84□□□□□ -0.67
USH2AO75445 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
USH2AO75445 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
USH2AO75445 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
USH2AO75445 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
USH2AO75445 KRT18P5-201ENST00000436075 1291 ntBASIC10.83□□□□□ -0.68
USH2AO75445 RHOF-204ENST00000537265 699 ntTSL 2 BASIC10.83□□□□□ -0.68
USH2AO75445 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
USH2AO75445 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
USH2AO75445 GRAMD4P4-201ENST00000613563 1115 ntBASIC10.83□□□□□ -0.68
USH2AO75445 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
USH2AO75445 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
USH2AO75445 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
USH2AO75445 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
USH2AO75445 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC10.83□□□□□ -0.68
USH2AO75445 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC10.83□□□□□ -0.68
USH2AO75445 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
USH2AO75445 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
USH2AO75445 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
USH2AO75445 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
USH2AO75445 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC10.83□□□□□ -0.68
USH2AO75445 IRS3P-201ENST00000223076 1006 ntBASIC10.82□□□□□ -0.68
USH2AO75445 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC10.82□□□□□ -0.68
USH2AO75445 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC10.82□□□□□ -0.68
USH2AO75445 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
USH2AO75445 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
USH2AO75445 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
USH2AO75445 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
USH2AO75445 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC10.82□□□□□ -0.68
USH2AO75445 AF131216.4-201ENST00000638924 1588 ntBASIC10.82□□□□□ -0.68
USH2AO75445 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
USH2AO75445 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
USH2AO75445 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
USH2AO75445 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC10.81□□□□□ -0.68
USH2AO75445 AC066615.1-201ENST00000640911 628 ntBASIC10.81□□□□□ -0.68
USH2AO75445 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC10.81□□□□□ -0.68
USH2AO75445 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
USH2AO75445 AC011551.1-201ENST00000614101 683 ntBASIC10.81□□□□□ -0.68
USH2AO75445 GAK-223ENST00000628912 497 ntTSL 5 BASIC10.81□□□□□ -0.68
USH2AO75445 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
USH2AO75445 AL137784.2-201ENST00000607332 1000 ntBASIC10.81□□□□□ -0.68
USH2AO75445 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC10.8□□□□□ -0.68
USH2AO75445 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
USH2AO75445 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC10.8□□□□□ -0.68
USH2AO75445 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
USH2AO75445 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
USH2AO75445 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC10.8□□□□□ -0.68
USH2AO75445 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC10.8□□□□□ -0.68
USH2AO75445 CLTA-206ENST00000466396 695 ntTSL 2 BASIC10.8□□□□□ -0.68
USH2AO75445 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
USH2AO75445 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
USH2AO75445 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
USH2AO75445 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC10.8□□□□□ -0.68
USH2AO75445 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
USH2AO75445 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC10.8□□□□□ -0.68
USH2AO75445 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC10.8□□□□□ -0.68
USH2AO75445 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC10.8□□□□□ -0.68
USH2AO75445 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
USH2AO75445 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC10.79□□□□□ -0.68
USH2AO75445 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
USH2AO75445 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms