Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 GREB1-209ENST00000472040 571 ntTSL 513.34□□□□□ -0.273e-6■■■□□ 18
CDC40O60508 GREB1-206ENST00000396123 5296 ntTSL 1 (best) BASIC12.34□□□□□ -0.433e-6■■■□□ 18
CDC40O60508 HNRNPM-209ENST00000597813 630 ntTSL 218.88■□□□□ 0.613e-16■■■□□ 18
CDC40O60508 HNRNPM-206ENST00000596984 664 ntTSL 517.15■□□□□ 0.343e-16■■■□□ 18
CDC40O60508 HNRNPM-215ENST00000601645 832 ntTSL 312.78□□□□□ -0.363e-16■■■□□ 18
CDC40O60508 HNRNPM-210ENST00000598367 298 ntTSL 59.42□□□□□ -0.93e-16■■■□□ 18
CDC40O60508 HNRNPM-203ENST00000593293 764 ntTSL 32.49□□□□□ -2.013e-16■■■□□ 18
CDC40O60508 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.281e-6■■■□□ 18
CDC40O60508 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.49■□□□□ 0.399e-9■■■□□ 17.9
CDC40O60508 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.299e-9■■■□□ 17.9
CDC40O60508 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC12.58□□□□□ -0.49e-9■■■□□ 17.9
CDC40O60508 LCAT-208ENST00000575467 842 ntTSL 517.76■□□□□ 0.437e-13■■■□□ 17.9
CDC40O60508 LCAT-204ENST00000570980 1240 ntTSL 217.46■□□□□ 0.397e-13■■■□□ 17.9
CDC40O60508 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.197e-13■■■□□ 17.9
CDC40O60508 PFKFB4-207ENST00000445633 1733 ntTSL 1 (best)21.36■■□□□ 1.013e-7■■■□□ 17.8
CDC40O60508 PFKFB4-205ENST00000417753 1744 ntTSL 1 (best)21.36■■□□□ 1.013e-7■■■□□ 17.8
CDC40O60508 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.02■□□□□ 0.953e-7■■■□□ 17.8
CDC40O60508 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.57■□□□□ 0.883e-7■■■□□ 17.8
CDC40O60508 PFKFB4-213ENST00000490115 1757 ntTSL 1 (best)17.3■□□□□ 0.363e-7■■■□□ 17.8
CDC40O60508 PFKFB4-208ENST00000452531 1011 ntTSL 516.69■□□□□ 0.263e-7■■■□□ 17.8
CDC40O60508 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.233e-7■■■□□ 17.8
CDC40O60508 PFKFB4-203ENST00000412035 567 ntTSL 411.87□□□□□ -0.513e-7■■■□□ 17.8
CDC40O60508 PFKFB4-210ENST00000468162 576 ntTSL 55.51□□□□□ -1.533e-7■■■□□ 17.8
CDC40O60508 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.61■□□□□ 0.096e-12■■■□□ 17.8
CDC40O60508 SNHG17-205ENST00000424235 764 ntTSL 215.02■□□□□ -06e-12■■■□□ 17.8
CDC40O60508 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.84□□□□□ -0.036e-12■■■□□ 17.8
CDC40O60508 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC13.35□□□□□ -0.276e-12■■■□□ 17.8
CDC40O60508 SNHG17-202ENST00000414142 2102 ntTSL 212.48□□□□□ -0.416e-12■■■□□ 17.8
CDC40O60508 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC12.36□□□□□ -0.436e-12■■■□□ 17.8
CDC40O60508 SNHG17-204ENST00000423536 517 ntTSL 2 BASIC7.82□□□□□ -1.166e-12■■■□□ 17.8
CDC40O60508 NKD1-201ENST00000268459 17105 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.977e-7■■■□□ 17.8
CDC40O60508 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.291e-6■■■□□ 17.8
CDC40O60508 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.61■□□□□ 0.891e-6■■■□□ 17.8
CDC40O60508 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.54□□□□□ -0.081e-6■■■□□ 17.8
CDC40O60508 ARHGAP5-204ENST00000432921 5003 ntTSL 5 BASIC8.89□□□□□ -0.991e-6■■■□□ 17.8
CDC40O60508 ARHGAP5-208ENST00000555814 583 ntTSL 48.25□□□□□ -1.091e-6■■■□□ 17.8
CDC40O60508 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.661e-6■■■□□ 17.8
CDC40O60508 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4.52□□□□□ -1.691e-6■■■□□ 17.8
CDC40O60508 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.11□□□□□ -2.071e-6■■■□□ 17.8
CDC40O60508 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC12.57□□□□□ -0.41e-11■■■□□ 17.7
CDC40O60508 DUXAP9-205ENST00000619938 642 ntTSL 1 (best)10.28□□□□□ -0.761e-11■■■□□ 17.7
CDC40O60508 DUXAP9-203ENST00000610585 903 ntTSL 310.02□□□□□ -0.811e-11■■■□□ 17.7
CDC40O60508 DUXAP9-207ENST00000621361 2397 ntTSL 1 (best)5.53□□□□□ -1.521e-11■■■□□ 17.7
CDC40O60508 COL27A1-202ENST00000451716 2865 ntTSL 1 (best)10.94□□□□□ -0.664e-6■■■□□ 17.7
CDC40O60508 CHD4-207ENST00000537634 691 ntTSL 29.03□□□□□ -0.964e-9■■■□□ 17.6
CDC40O60508 CHD4-212ENST00000545083 511 ntTSL 38.83□□□□□ -14e-9■■■□□ 17.6
CDC40O60508 SH3D21-202ENST00000474766 2043 ntTSL 1 (best)18.98■□□□□ 0.639e-9■■■□□ 17.5
CDC40O60508 PDE8A-211ENST00000559742 2584 ntTSL 1 (best)16.88■□□□□ 0.299e-9■■■□□ 17.5
CDC40O60508 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.299e-9■■■□□ 17.5
CDC40O60508 PDE8A-204ENST00000478717 2722 ntTSL 1 (best)16.2■□□□□ 0.189e-9■■■□□ 17.5
CDC40O60508 PDE8A-210ENST00000559086 538 ntTSL 415.9■□□□□ 0.149e-9■■■□□ 17.5
CDC40O60508 PDE8A-205ENST00000485596 2999 ntTSL 1 (best)15.51■□□□□ 0.079e-9■■■□□ 17.5
CDC40O60508 SH3D21-203ENST00000480549 3182 ntTSL 215.16■□□□□ 0.029e-9■■■□□ 17.5
CDC40O60508 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.249e-9■■■□□ 17.5
CDC40O60508 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.39e-9■■■□□ 17.5
CDC40O60508 MDM2-219ENST00000493419 577 ntTSL 212.94□□□□□ -0.349e-9■■■□□ 17.5
CDC40O60508 PPARA-202ENST00000402126 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.479e-9■■■□□ 17.5
CDC40O60508 PDE8A-208ENST00000557957 3716 ntAPPRIS ALT2 TSL 2 BASIC10.41□□□□□ -0.749e-9■■■□□ 17.5
CDC40O60508 NHLRC3-203ENST00000470258 3298 ntTSL 1 (best) BASIC8.67□□□□□ -1.029e-9■■■□□ 17.5
CDC40O60508 NHLRC3-202ENST00000379600 3549 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.069e-9■■■□□ 17.5
CDC40O60508 PPARA-203ENST00000407236 9995 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.079e-9■■■□□ 17.5
CDC40O60508 PPARA-201ENST00000262735 9965 ntAPPRIS P1 TSL 5 BASIC7.94□□□□□ -1.149e-9■■■□□ 17.5
CDC40O60508 NHLRC3-201ENST00000379599 3275 ntTSL 1 (best) BASIC7.67□□□□□ -1.189e-9■■■□□ 17.5
CDC40O60508 PDE8A-213ENST00000560789 4664 ntTSL 25.61□□□□□ -1.519e-9■■■□□ 17.5
CDC40O60508 NHLRC3-205ENST00000485407 623 ntTSL 34.85□□□□□ -1.639e-9■■■□□ 17.5
CDC40O60508 PDE8A-206ENST00000557819 575 ntTSL 42.62□□□□□ -1.999e-9■■■□□ 17.5
CDC40O60508 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.571e-6■■■□□ 17.5
CDC40O60508 TTYH3-204ENST00000407643 4537 ntTSL 5 BASIC12.45□□□□□ -0.421e-6■■■□□ 17.5
CDC40O60508 LAMA5-201ENST00000252999 11426 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.532e-6■■■□□ 17.5
CDC40O60508 ARID3A-205ENST00000587532 1016 ntTSL 517.16■□□□□ 0.342e-6■■■□□ 17.5
CDC40O60508 ARID3A-202ENST00000457152 549 ntTSL 512.28□□□□□ -0.442e-6■■■□□ 17.5
CDC40O60508 COL18A1-201ENST00000342220 3386 ntTSL 212.03□□□□□ -0.481e-7■■■□□ 17.5
CDC40O60508 PGK1-201ENST00000373316 4887 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.81e-10■■■□□ 17.4
CDC40O60508 PGK1-203ENST00000476531 960 ntTSL 29.69□□□□□ -0.861e-10■■■□□ 17.4
CDC40O60508 ZNF331-219ENST00000513929 1424 ntTSL 216.79■□□□□ 0.282e-10■■■□□ 17.4
CDC40O60508 NAT9-225ENST00000583834 1993 ntTSL 316.47■□□□□ 0.237e-7■■■□□ 17.3
CDC40O60508 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.82■□□□□ 0.127e-7■■■□□ 17.3
CDC40O60508 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.15■□□□□ 0.027e-7■■■□□ 17.3
CDC40O60508 NAT9-222ENST00000583476 583 ntTSL 3 BASIC13.76□□□□□ -0.217e-7■■■□□ 17.3
CDC40O60508 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.277e-7■■■□□ 17.3
CDC40O60508 NAT9-211ENST00000580632 799 ntTSL 3 BASIC13.24□□□□□ -0.297e-7■■■□□ 17.3
CDC40O60508 NAT9-215ENST00000581762 744 ntTSL 213.15□□□□□ -0.37e-7■■■□□ 17.3
CDC40O60508 NAT9-220ENST00000582870 896 ntTSL 5 BASIC13.13□□□□□ -0.317e-7■■■□□ 17.3
CDC40O60508 NAT9-224ENST00000583757 583 ntTSL 3 BASIC12.99□□□□□ -0.337e-7■■■□□ 17.3
CDC40O60508 NAT9-227ENST00000584022 1103 ntTSL 212.9□□□□□ -0.347e-7■■■□□ 17.3
CDC40O60508 NAT9-203ENST00000578798 695 ntTSL 312.14□□□□□ -0.477e-7■■■□□ 17.3
CDC40O60508 NAT9-204ENST00000578822 839 ntTSL 3 BASIC11.55□□□□□ -0.567e-7■■■□□ 17.3
CDC40O60508 NAT9-219ENST00000582524 573 ntTSL 4 BASIC11.2□□□□□ -0.627e-7■■■□□ 17.3
CDC40O60508 NAT9-207ENST00000579218 583 ntTSL 510.46□□□□□ -0.737e-7■■■□□ 17.3
CDC40O60508 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.77□□□□□ -0.041e-6■■■□□ 17.3
CDC40O60508 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.191e-6■■■□□ 17.3
CDC40O60508 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.211e-6■■■□□ 17.3
CDC40O60508 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.321e-6■■■□□ 17.3
CDC40O60508 BCAR1-211ENST00000562556 4659 ntTSL 212.67□□□□□ -0.381e-6■■■□□ 17.3
CDC40O60508 BCAR1-203ENST00000393422 4064 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.551e-6■■■□□ 17.3
CDC40O60508 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.355e-6■■■□□ 17.2
CDC40O60508 CASD1-202ENST00000417387 352 ntTSL 312.17□□□□□ -0.465e-6■■■□□ 17.2
CDC40O60508 CASD1-203ENST00000443644 641 ntTSL 510.94□□□□□ -0.665e-6■■■□□ 17.2
CDC40O60508 CASD1-204ENST00000447923 532 ntTSL 42.99□□□□□ -1.935e-6■■■□□ 17.2
CDC40O60508 CHTF18-216ENST00000565787 607 ntTSL 521.79■■□□□ 1.083e-6■■■□□ 17.2
Retrieved 100 of 5,364 protein–RNA pairs in 269.7 ms