Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.31■■□□□ 1
SSX4O60224 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
SSX4O60224 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
SSX4O60224 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SSX4O60224 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.3■■□□□ 1
SSX4O60224 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SSX4O60224 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SSX4O60224 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SSX4O60224 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.29■■□□□ 1
SSX4O60224 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
SSX4O60224 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SSX4O60224 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
SSX4O60224 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.29■■□□□ 1
SSX4O60224 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
SSX4O60224 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SSX4O60224 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
SSX4O60224 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
SSX4O60224 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
SSX4O60224 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SSX4O60224 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.28■■□□□ 1
SSX4O60224 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.28■■□□□ 1
SSX4O60224 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.28■■□□□ 1
SSX4O60224 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.28■■□□□ 1
SSX4O60224 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SSX4O60224 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
SSX4O60224 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
SSX4O60224 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
SSX4O60224 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.27■■□□□ 1
SSX4O60224 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.27■■□□□ 1
SSX4O60224 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SSX4O60224 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SSX4O60224 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
SSX4O60224 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SSX4O60224 KRT18P60-201ENST00000312876 1297 ntBASIC21.26■□□□□ 0.99
SSX4O60224 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SSX4O60224 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SSX4O60224 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
SSX4O60224 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
SSX4O60224 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SSX4O60224 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SSX4O60224 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SSX4O60224 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.25■□□□□ 0.99
SSX4O60224 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SSX4O60224 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SSX4O60224 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC21.24■□□□□ 0.99
SSX4O60224 TSPY13P-201ENST00000338964 914 ntBASIC21.24■□□□□ 0.99
SSX4O60224 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SSX4O60224 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SSX4O60224 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SSX4O60224 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC21.23■□□□□ 0.99
SSX4O60224 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SSX4O60224 AC004987.1-201ENST00000428627 508 ntBASIC21.23■□□□□ 0.99
SSX4O60224 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.23■□□□□ 0.99
SSX4O60224 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
SSX4O60224 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SSX4O60224 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.23■□□□□ 0.99
SSX4O60224 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
SSX4O60224 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SSX4O60224 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SSX4O60224 AP004609.3-201ENST00000610705 1884 ntBASIC21.22■□□□□ 0.99
SSX4O60224 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.22■□□□□ 0.99
SSX4O60224 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SSX4O60224 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.22■□□□□ 0.99
SSX4O60224 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.22■□□□□ 0.99
SSX4O60224 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SSX4O60224 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.21■□□□□ 0.99
SSX4O60224 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SSX4O60224 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SSX4O60224 ATP5G2P3-201ENST00000429083 425 ntBASIC21.21■□□□□ 0.99
SSX4O60224 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SSX4O60224 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SSX4O60224 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SSX4O60224 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SSX4O60224 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SSX4O60224 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.21■□□□□ 0.99
SSX4O60224 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SSX4O60224 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
SSX4O60224 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SSX4O60224 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.2■□□□□ 0.98
SSX4O60224 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.2■□□□□ 0.98
SSX4O60224 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SSX4O60224 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SSX4O60224 AC022211.4-201ENST00000625094 2161 ntBASIC21.2■□□□□ 0.98
SSX4O60224 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SSX4O60224 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.2■□□□□ 0.98
SSX4O60224 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SSX4O60224 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC21.19■□□□□ 0.98
SSX4O60224 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
SSX4O60224 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SSX4O60224 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SSX4O60224 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.19■□□□□ 0.98
SSX4O60224 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SSX4O60224 AL157400.5-201ENST00000507624 621 ntBASIC21.19■□□□□ 0.98
SSX4O60224 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SSX4O60224 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.19■□□□□ 0.98
SSX4O60224 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.19■□□□□ 0.98
SSX4O60224 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SSX4O60224 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SSX4O60224 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SSX4O60224 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms