Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC31.86■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 REST-210ENST00000638187 1334 ntTSL 5 BASIC31.86■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC31.86■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC31.86■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC31.86■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC31.84■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC31.84■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC31.84■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC31.82■■■□□ 2.69
SENP3-EIF4A1A0A087X0R7 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC31.82■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC31.82■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 AC133552.2-201ENST00000619106 1032 ntBASIC31.82■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC31.82■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 RAP2CP1-202ENST00000605179 643 ntBASIC31.81■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC31.81■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC31.8■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC31.8■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC31.79■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC31.78■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC31.78■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC31.78■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 SPCS2P3-201ENST00000500401 656 ntBASIC31.77■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 AC092666.2-201ENST00000613287 246 ntBASIC31.77■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC31.77■■■□□ 2.68
SENP3-EIF4A1A0A087X0R7 AL592293.1-201ENST00000502889 1188 ntBASIC31.76■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC31.76■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC31.75■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 HES6-204ENST00000409182 863 ntTSL 2 BASIC31.75■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 LSM7-203ENST00000585409 512 ntTSL 2 BASIC31.75■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC31.75■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC31.75■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC31.75■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 AC022211.4-201ENST00000625094 2161 ntBASIC31.74■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC31.74■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC31.74■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC31.73■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 MED17-227ENST00000640521 2047 ntTSL 5 BASIC31.73■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 AC138932.3-201ENST00000567634 1902 ntBASIC31.73■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC31.73■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC31.73■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC31.73■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC31.73■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC31.73■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 AC009299.2-201ENST00000482477 511 ntBASIC31.72■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC31.72■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.72■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC31.72■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC31.71■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC31.71■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC31.7■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC31.7■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 GUSBP5-201ENST00000418136 578 ntBASIC31.7■■■□□ 2.67
SENP3-EIF4A1A0A087X0R7 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC31.7■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC31.69■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms