Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
SMC4Q9NTJ3 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC30.7■■■□□ 2.51
SMC4Q9NTJ3 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
SMC4Q9NTJ3 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
SMC4Q9NTJ3 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC30.7■■■□□ 2.51
SMC4Q9NTJ3 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC30.7■■■□□ 2.51
SMC4Q9NTJ3 NTF6A-201ENST00000591175 560 ntBASIC30.7■■■□□ 2.51
SMC4Q9NTJ3 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC30.7■■■□□ 2.5
SMC4Q9NTJ3 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SMC4Q9NTJ3 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
SMC4Q9NTJ3 AC097639.1-201ENST00000565519 1891 ntBASIC30.69■■■□□ 2.5
SMC4Q9NTJ3 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SMC4Q9NTJ3 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC30.68■■■□□ 2.5
SMC4Q9NTJ3 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
SMC4Q9NTJ3 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
SMC4Q9NTJ3 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SMC4Q9NTJ3 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC30.68■■■□□ 2.5
SMC4Q9NTJ3 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
SMC4Q9NTJ3 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC30.67■■■□□ 2.5
SMC4Q9NTJ3 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC30.67■■■□□ 2.5
SMC4Q9NTJ3 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SMC4Q9NTJ3 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
SMC4Q9NTJ3 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
SMC4Q9NTJ3 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
SMC4Q9NTJ3 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC30.67■■■□□ 2.5
SMC4Q9NTJ3 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
SMC4Q9NTJ3 DUX4L9-201ENST00000449051 1259 ntBASIC30.66■■■□□ 2.5
SMC4Q9NTJ3 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
SMC4Q9NTJ3 CEBPA-AS1-201ENST00000592982 2198 ntBASIC30.66■■■□□ 2.5
SMC4Q9NTJ3 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
SMC4Q9NTJ3 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SMC4Q9NTJ3 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
SMC4Q9NTJ3 AC129492.7-201ENST00000622992 756 ntBASIC30.65■■■□□ 2.5
SMC4Q9NTJ3 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
SMC4Q9NTJ3 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SMC4Q9NTJ3 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SMC4Q9NTJ3 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC30.64■■■□□ 2.5
SMC4Q9NTJ3 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
SMC4Q9NTJ3 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC30.64■■■□□ 2.5
SMC4Q9NTJ3 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC30.64■■■□□ 2.5
SMC4Q9NTJ3 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC30.64■■■□□ 2.5
SMC4Q9NTJ3 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
SMC4Q9NTJ3 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC30.64■■■□□ 2.5
SMC4Q9NTJ3 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC30.64■■■□□ 2.49
SMC4Q9NTJ3 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC30.64■■■□□ 2.49
SMC4Q9NTJ3 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
SMC4Q9NTJ3 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
SMC4Q9NTJ3 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC30.63■■■□□ 2.49
SMC4Q9NTJ3 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC30.62■■■□□ 2.49
SMC4Q9NTJ3 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SMC4Q9NTJ3 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
SMC4Q9NTJ3 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
SMC4Q9NTJ3 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
SMC4Q9NTJ3 AC018755.3-202ENST00000596210 929 ntBASIC30.61■■■□□ 2.49
SMC4Q9NTJ3 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
SMC4Q9NTJ3 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
SMC4Q9NTJ3 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
SMC4Q9NTJ3 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
SMC4Q9NTJ3 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
SMC4Q9NTJ3 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
SMC4Q9NTJ3 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC30.6■■■□□ 2.49
SMC4Q9NTJ3 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC30.59■■■□□ 2.49
SMC4Q9NTJ3 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
SMC4Q9NTJ3 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
SMC4Q9NTJ3 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SMC4Q9NTJ3 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC30.58■■■□□ 2.49
SMC4Q9NTJ3 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
SMC4Q9NTJ3 MIR6765-201ENST00000614092 87 ntBASIC30.57■■■□□ 2.48
SMC4Q9NTJ3 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
SMC4Q9NTJ3 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC30.55■■■□□ 2.48
SMC4Q9NTJ3 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC30.55■■■□□ 2.48
SMC4Q9NTJ3 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC30.55■■■□□ 2.48
SMC4Q9NTJ3 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
SMC4Q9NTJ3 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC30.55■■■□□ 2.48
SMC4Q9NTJ3 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC30.55■■■□□ 2.48
SMC4Q9NTJ3 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC30.55■■■□□ 2.48
SMC4Q9NTJ3 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SMC4Q9NTJ3 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SMC4Q9NTJ3 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SMC4Q9NTJ3 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SMC4Q9NTJ3 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SMC4Q9NTJ3 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SMC4Q9NTJ3 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC30.54■■■□□ 2.48
SMC4Q9NTJ3 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
SMC4Q9NTJ3 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
SMC4Q9NTJ3 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SMC4Q9NTJ3 KRT18P10-201ENST00000388836 1287 ntBASIC30.52■■■□□ 2.48
SMC4Q9NTJ3 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC30.52■■■□□ 2.48
SMC4Q9NTJ3 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC30.52■■■□□ 2.48
SMC4Q9NTJ3 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SMC4Q9NTJ3 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC30.52■■■□□ 2.48
SMC4Q9NTJ3 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
SMC4Q9NTJ3 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC30.51■■■□□ 2.47
SMC4Q9NTJ3 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC30.51■■■□□ 2.47
SMC4Q9NTJ3 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC30.51■■■□□ 2.47
SMC4Q9NTJ3 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
SMC4Q9NTJ3 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC30.51■■■□□ 2.47
SMC4Q9NTJ3 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
SMC4Q9NTJ3 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC30.51■■■□□ 2.47
SMC4Q9NTJ3 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC30.5■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms