Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
DDX4Q9NQI0 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC28.57■■■□□ 2.16
DDX4Q9NQI0 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
DDX4Q9NQI0 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
DDX4Q9NQI0 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC28.57■■■□□ 2.16
DDX4Q9NQI0 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC28.57■■■□□ 2.16
DDX4Q9NQI0 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC28.57■■■□□ 2.16
DDX4Q9NQI0 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC28.57■■■□□ 2.16
DDX4Q9NQI0 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
DDX4Q9NQI0 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
DDX4Q9NQI0 CREM-229ENST00000474362 1030 ntTSL 2 BASIC28.56■■■□□ 2.16
DDX4Q9NQI0 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC28.56■■■□□ 2.16
DDX4Q9NQI0 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC28.56■■■□□ 2.16
DDX4Q9NQI0 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC28.55■■■□□ 2.16
DDX4Q9NQI0 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
DDX4Q9NQI0 KRT18P24-201ENST00000344739 1156 ntBASIC28.55■■■□□ 2.16
DDX4Q9NQI0 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC28.55■■■□□ 2.16
DDX4Q9NQI0 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC28.55■■■□□ 2.16
DDX4Q9NQI0 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC28.55■■■□□ 2.16
DDX4Q9NQI0 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC28.55■■■□□ 2.16
DDX4Q9NQI0 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC28.55■■■□□ 2.16
DDX4Q9NQI0 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
DDX4Q9NQI0 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC28.54■■■□□ 2.16
DDX4Q9NQI0 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
DDX4Q9NQI0 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
DDX4Q9NQI0 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
DDX4Q9NQI0 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC28.54■■■□□ 2.16
DDX4Q9NQI0 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC28.53■■■□□ 2.16
DDX4Q9NQI0 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC28.52■■■□□ 2.16
DDX4Q9NQI0 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC28.52■■■□□ 2.16
DDX4Q9NQI0 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC28.52■■■□□ 2.16
DDX4Q9NQI0 AC120024.1-201ENST00000562672 995 ntBASIC28.52■■■□□ 2.16
DDX4Q9NQI0 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC28.52■■■□□ 2.16
DDX4Q9NQI0 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
DDX4Q9NQI0 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC28.52■■■□□ 2.16
DDX4Q9NQI0 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
DDX4Q9NQI0 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
DDX4Q9NQI0 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
DDX4Q9NQI0 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
DDX4Q9NQI0 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
DDX4Q9NQI0 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
DDX4Q9NQI0 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC28.5■■■□□ 2.15
DDX4Q9NQI0 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC28.49■■■□□ 2.15
DDX4Q9NQI0 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
DDX4Q9NQI0 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
DDX4Q9NQI0 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
DDX4Q9NQI0 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC28.48■■■□□ 2.15
DDX4Q9NQI0 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC28.48■■■□□ 2.15
DDX4Q9NQI0 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC28.48■■■□□ 2.15
DDX4Q9NQI0 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC28.47■■■□□ 2.15
DDX4Q9NQI0 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
DDX4Q9NQI0 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
DDX4Q9NQI0 MIR4787-201ENST00000607364 84 ntBASIC28.47■■■□□ 2.15
DDX4Q9NQI0 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC28.47■■■□□ 2.15
DDX4Q9NQI0 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC28.47■■■□□ 2.15
DDX4Q9NQI0 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC28.46■■■□□ 2.15
DDX4Q9NQI0 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC28.46■■■□□ 2.15
DDX4Q9NQI0 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
DDX4Q9NQI0 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC28.46■■■□□ 2.15
DDX4Q9NQI0 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC28.46■■■□□ 2.15
DDX4Q9NQI0 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
DDX4Q9NQI0 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC28.46■■■□□ 2.15
DDX4Q9NQI0 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
DDX4Q9NQI0 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC28.45■■■□□ 2.14
DDX4Q9NQI0 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC28.45■■■□□ 2.14
DDX4Q9NQI0 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC28.45■■■□□ 2.14
DDX4Q9NQI0 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
DDX4Q9NQI0 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC28.44■■■□□ 2.14
DDX4Q9NQI0 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
DDX4Q9NQI0 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC28.44■■■□□ 2.14
DDX4Q9NQI0 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
DDX4Q9NQI0 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
DDX4Q9NQI0 BX664725.1-201ENST00000438252 379 ntBASIC28.44■■■□□ 2.14
DDX4Q9NQI0 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC28.44■■■□□ 2.14
DDX4Q9NQI0 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC28.44■■■□□ 2.14
DDX4Q9NQI0 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC28.43■■■□□ 2.14
DDX4Q9NQI0 SNAI3-AS1-204ENST00000567997 2048 ntBASIC28.43■■■□□ 2.14
DDX4Q9NQI0 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC28.43■■■□□ 2.14
DDX4Q9NQI0 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC28.43■■■□□ 2.14
DDX4Q9NQI0 UNC93B8-201ENST00000511903 705 ntBASIC28.43■■■□□ 2.14
DDX4Q9NQI0 KRT125P-201ENST00000546827 989 ntBASIC28.43■■■□□ 2.14
DDX4Q9NQI0 AC137630.3-201ENST00000607245 391 ntBASIC28.43■■■□□ 2.14
DDX4Q9NQI0 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC28.42■■■□□ 2.14
DDX4Q9NQI0 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC28.42■■■□□ 2.14
DDX4Q9NQI0 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
DDX4Q9NQI0 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
DDX4Q9NQI0 MTURN-203ENST00000409688 843 ntTSL 2 BASIC28.42■■■□□ 2.14
DDX4Q9NQI0 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
DDX4Q9NQI0 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC28.42■■■□□ 2.14
DDX4Q9NQI0 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC28.41■■■□□ 2.14
DDX4Q9NQI0 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC28.41■■■□□ 2.14
DDX4Q9NQI0 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
DDX4Q9NQI0 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
DDX4Q9NQI0 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC28.41■■■□□ 2.14
DDX4Q9NQI0 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC28.41■■■□□ 2.14
DDX4Q9NQI0 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC28.41■■■□□ 2.14
DDX4Q9NQI0 GRAMD4P7-201ENST00000578182 1232 ntBASIC28.41■■■□□ 2.14
DDX4Q9NQI0 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
DDX4Q9NQI0 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC28.4■■■□□ 2.14
DDX4Q9NQI0 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC28.4■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 429.4 ms