Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM39Q9HCM9 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
TRIM39Q9HCM9 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
TRIM39Q9HCM9 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.68■■□□□ 1.38
TRIM39Q9HCM9 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
TRIM39Q9HCM9 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
TRIM39Q9HCM9 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
TRIM39Q9HCM9 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.67■■□□□ 1.38
TRIM39Q9HCM9 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
TRIM39Q9HCM9 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
TRIM39Q9HCM9 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC23.66■■□□□ 1.38
TRIM39Q9HCM9 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.66■■□□□ 1.38
TRIM39Q9HCM9 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
TRIM39Q9HCM9 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
TRIM39Q9HCM9 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.66■■□□□ 1.38
TRIM39Q9HCM9 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.65■■□□□ 1.38
TRIM39Q9HCM9 AC010501.1-201ENST00000606270 1962 ntBASIC23.65■■□□□ 1.38
TRIM39Q9HCM9 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC23.65■■□□□ 1.38
TRIM39Q9HCM9 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
TRIM39Q9HCM9 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC23.65■■□□□ 1.38
TRIM39Q9HCM9 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC23.64■■□□□ 1.37
TRIM39Q9HCM9 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
TRIM39Q9HCM9 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
TRIM39Q9HCM9 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
TRIM39Q9HCM9 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
TRIM39Q9HCM9 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM39Q9HCM9 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM39Q9HCM9 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC23.63■■□□□ 1.37
TRIM39Q9HCM9 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.63■■□□□ 1.37
TRIM39Q9HCM9 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
TRIM39Q9HCM9 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM39Q9HCM9 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM39Q9HCM9 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM39Q9HCM9 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC23.63■■□□□ 1.37
TRIM39Q9HCM9 MTX2-204ENST00000443241 799 ntTSL 3 BASIC23.63■■□□□ 1.37
TRIM39Q9HCM9 AC010980.1-201ENST00000587192 1142 ntBASIC23.63■■□□□ 1.37
TRIM39Q9HCM9 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
TRIM39Q9HCM9 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
TRIM39Q9HCM9 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.62■■□□□ 1.37
TRIM39Q9HCM9 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
TRIM39Q9HCM9 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC23.62■■□□□ 1.37
TRIM39Q9HCM9 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.62■■□□□ 1.37
TRIM39Q9HCM9 AC091060.1-201ENST00000623524 1766 ntBASIC23.62■■□□□ 1.37
TRIM39Q9HCM9 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
TRIM39Q9HCM9 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
TRIM39Q9HCM9 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
TRIM39Q9HCM9 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
TRIM39Q9HCM9 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
TRIM39Q9HCM9 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC23.61■■□□□ 1.37
TRIM39Q9HCM9 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.61■■□□□ 1.37
TRIM39Q9HCM9 AC096887.2-201ENST00000623443 1957 ntBASIC23.61■■□□□ 1.37
TRIM39Q9HCM9 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
TRIM39Q9HCM9 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
TRIM39Q9HCM9 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
TRIM39Q9HCM9 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
TRIM39Q9HCM9 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
TRIM39Q9HCM9 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
TRIM39Q9HCM9 LONRF2P2-201ENST00000439212 571 ntBASIC23.6■■□□□ 1.37
TRIM39Q9HCM9 AC019171.1-201ENST00000601251 1056 ntBASIC23.6■■□□□ 1.37
TRIM39Q9HCM9 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TRIM39Q9HCM9 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
TRIM39Q9HCM9 IDNK-201ENST00000376417 511 ntTSL 5 BASIC23.59■■□□□ 1.37
TRIM39Q9HCM9 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
TRIM39Q9HCM9 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
TRIM39Q9HCM9 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
TRIM39Q9HCM9 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.59■■□□□ 1.37
TRIM39Q9HCM9 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.59■■□□□ 1.37
TRIM39Q9HCM9 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
TRIM39Q9HCM9 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
TRIM39Q9HCM9 DUSP8P4-201ENST00000399538 1761 ntBASIC23.58■■□□□ 1.37
TRIM39Q9HCM9 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
TRIM39Q9HCM9 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
TRIM39Q9HCM9 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC23.58■■□□□ 1.37
TRIM39Q9HCM9 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC23.58■■□□□ 1.37
TRIM39Q9HCM9 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC23.58■■□□□ 1.37
TRIM39Q9HCM9 PVT1_1.1-201ENST00000615125 194 ntBASIC23.58■■□□□ 1.37
TRIM39Q9HCM9 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC23.58■■□□□ 1.36
TRIM39Q9HCM9 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
TRIM39Q9HCM9 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
TRIM39Q9HCM9 BEX3-202ENST00000372634 753 ntTSL 2 BASIC23.57■■□□□ 1.36
TRIM39Q9HCM9 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC23.57■■□□□ 1.36
TRIM39Q9HCM9 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.57■■□□□ 1.36
TRIM39Q9HCM9 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
TRIM39Q9HCM9 AC145676.1-201ENST00000514988 2004 ntBASIC23.57■■□□□ 1.36
TRIM39Q9HCM9 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.57■■□□□ 1.36
TRIM39Q9HCM9 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
TRIM39Q9HCM9 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC23.56■■□□□ 1.36
TRIM39Q9HCM9 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
TRIM39Q9HCM9 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
TRIM39Q9HCM9 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.56■■□□□ 1.36
TRIM39Q9HCM9 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
TRIM39Q9HCM9 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
TRIM39Q9HCM9 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC23.55■■□□□ 1.36
TRIM39Q9HCM9 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
TRIM39Q9HCM9 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.55■■□□□ 1.36
TRIM39Q9HCM9 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
TRIM39Q9HCM9 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
TRIM39Q9HCM9 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
TRIM39Q9HCM9 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC23.54■■□□□ 1.36
TRIM39Q9HCM9 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms