Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC21.04■□□□□ 0.96
SKA3Q8IX90 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
SKA3Q8IX90 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.04■□□□□ 0.96
SKA3Q8IX90 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.04■□□□□ 0.96
SKA3Q8IX90 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.04■□□□□ 0.96
SKA3Q8IX90 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
SKA3Q8IX90 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
SKA3Q8IX90 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
SKA3Q8IX90 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SKA3Q8IX90 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SKA3Q8IX90 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SKA3Q8IX90 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SKA3Q8IX90 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.03■□□□□ 0.96
SKA3Q8IX90 KRT18P60-201ENST00000312876 1297 ntBASIC21.03■□□□□ 0.96
SKA3Q8IX90 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.03■□□□□ 0.96
SKA3Q8IX90 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SKA3Q8IX90 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.03■□□□□ 0.96
SKA3Q8IX90 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
SKA3Q8IX90 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.03■□□□□ 0.96
SKA3Q8IX90 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.03■□□□□ 0.96
SKA3Q8IX90 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SKA3Q8IX90 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.02■□□□□ 0.96
SKA3Q8IX90 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.02■□□□□ 0.96
SKA3Q8IX90 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SKA3Q8IX90 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SKA3Q8IX90 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SKA3Q8IX90 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.02■□□□□ 0.96
SKA3Q8IX90 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.02■□□□□ 0.96
SKA3Q8IX90 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.02■□□□□ 0.95
SKA3Q8IX90 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
SKA3Q8IX90 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
SKA3Q8IX90 SPCS2P3-201ENST00000500401 656 ntBASIC21.01■□□□□ 0.95
SKA3Q8IX90 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
SKA3Q8IX90 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
SKA3Q8IX90 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SKA3Q8IX90 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SKA3Q8IX90 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21■□□□□ 0.95
SKA3Q8IX90 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21■□□□□ 0.95
SKA3Q8IX90 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
SKA3Q8IX90 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21■□□□□ 0.95
SKA3Q8IX90 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21■□□□□ 0.95
SKA3Q8IX90 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SKA3Q8IX90 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SKA3Q8IX90 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SKA3Q8IX90 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SKA3Q8IX90 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SKA3Q8IX90 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
SKA3Q8IX90 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.99■□□□□ 0.95
SKA3Q8IX90 AC129492.7-201ENST00000622992 756 ntBASIC20.99■□□□□ 0.95
SKA3Q8IX90 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
SKA3Q8IX90 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SKA3Q8IX90 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.99■□□□□ 0.95
SKA3Q8IX90 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SKA3Q8IX90 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SKA3Q8IX90 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SKA3Q8IX90 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SKA3Q8IX90 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SKA3Q8IX90 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SKA3Q8IX90 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SKA3Q8IX90 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SKA3Q8IX90 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SKA3Q8IX90 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SKA3Q8IX90 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SKA3Q8IX90 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SKA3Q8IX90 DUX4L9-201ENST00000449051 1259 ntBASIC20.97■□□□□ 0.95
SKA3Q8IX90 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.97■□□□□ 0.95
SKA3Q8IX90 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SKA3Q8IX90 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SKA3Q8IX90 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
SKA3Q8IX90 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SKA3Q8IX90 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SKA3Q8IX90 AC018755.3-202ENST00000596210 929 ntBASIC20.96■□□□□ 0.95
SKA3Q8IX90 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SKA3Q8IX90 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.96■□□□□ 0.95
SKA3Q8IX90 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.95
SKA3Q8IX90 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SKA3Q8IX90 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SKA3Q8IX90 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.95■□□□□ 0.94
SKA3Q8IX90 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.95■□□□□ 0.94
SKA3Q8IX90 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC20.95■□□□□ 0.94
SKA3Q8IX90 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SKA3Q8IX90 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SKA3Q8IX90 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SKA3Q8IX90 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
SKA3Q8IX90 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SKA3Q8IX90 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
SKA3Q8IX90 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
SKA3Q8IX90 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA3Q8IX90 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
SKA3Q8IX90 AC097639.1-201ENST00000565519 1891 ntBASIC20.93■□□□□ 0.94
SKA3Q8IX90 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SKA3Q8IX90 MIR6765-201ENST00000614092 87 ntBASIC20.93■□□□□ 0.94
SKA3Q8IX90 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA3Q8IX90 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.93■□□□□ 0.94
SKA3Q8IX90 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.93■□□□□ 0.94
SKA3Q8IX90 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SKA3Q8IX90 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA3Q8IX90 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SKA3Q8IX90 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SKA3Q8IX90 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms