Protein–RNA interactions for Protein: Q86TM3

DDX53, Probable ATP-dependent RNA helicase DDX53, humanhuman

Known RBP Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX53Q86TM3 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
DDX53Q86TM3 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
DDX53Q86TM3 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC25.61■■□□□ 1.69
DDX53Q86TM3 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC25.61■■□□□ 1.69
DDX53Q86TM3 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC25.61■■□□□ 1.69
DDX53Q86TM3 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
DDX53Q86TM3 AP004609.3-201ENST00000610705 1884 ntBASIC25.61■■□□□ 1.69
DDX53Q86TM3 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC25.6■■□□□ 1.69
DDX53Q86TM3 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
DDX53Q86TM3 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC25.6■■□□□ 1.69
DDX53Q86TM3 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC25.6■■□□□ 1.69
DDX53Q86TM3 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC25.6■■□□□ 1.69
DDX53Q86TM3 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
DDX53Q86TM3 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC25.6■■□□□ 1.69
DDX53Q86TM3 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
DDX53Q86TM3 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
DDX53Q86TM3 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
DDX53Q86TM3 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
DDX53Q86TM3 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
DDX53Q86TM3 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
DDX53Q86TM3 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC25.59■■□□□ 1.69
DDX53Q86TM3 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
DDX53Q86TM3 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
DDX53Q86TM3 AC008406.3-201ENST00000620001 1374 ntBASIC25.58■■□□□ 1.69
DDX53Q86TM3 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
DDX53Q86TM3 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
DDX53Q86TM3 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
DDX53Q86TM3 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC25.58■■□□□ 1.69
DDX53Q86TM3 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
DDX53Q86TM3 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.68
DDX53Q86TM3 AC021242.3-201ENST00000607598 1377 ntBASIC25.57■■□□□ 1.68
DDX53Q86TM3 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC25.57■■□□□ 1.68
DDX53Q86TM3 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC25.57■■□□□ 1.68
DDX53Q86TM3 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
DDX53Q86TM3 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC25.56■■□□□ 1.68
DDX53Q86TM3 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC25.56■■□□□ 1.68
DDX53Q86TM3 KRT16P3-201ENST00000439127 1283 ntBASIC25.56■■□□□ 1.68
DDX53Q86TM3 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC25.55■■□□□ 1.68
DDX53Q86TM3 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
DDX53Q86TM3 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
DDX53Q86TM3 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC25.55■■□□□ 1.68
DDX53Q86TM3 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
DDX53Q86TM3 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
DDX53Q86TM3 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
DDX53Q86TM3 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
DDX53Q86TM3 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
DDX53Q86TM3 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC25.54■■□□□ 1.68
DDX53Q86TM3 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
DDX53Q86TM3 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
DDX53Q86TM3 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC25.54■■□□□ 1.68
DDX53Q86TM3 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC25.54■■□□□ 1.68
DDX53Q86TM3 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC25.54■■□□□ 1.68
DDX53Q86TM3 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
DDX53Q86TM3 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
DDX53Q86TM3 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
DDX53Q86TM3 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC25.53■■□□□ 1.68
DDX53Q86TM3 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC25.53■■□□□ 1.68
DDX53Q86TM3 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC25.53■■□□□ 1.68
DDX53Q86TM3 LSM7-203ENST00000585409 512 ntTSL 2 BASIC25.53■■□□□ 1.68
DDX53Q86TM3 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
DDX53Q86TM3 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC25.52■■□□□ 1.68
DDX53Q86TM3 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
DDX53Q86TM3 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
DDX53Q86TM3 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
DDX53Q86TM3 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
DDX53Q86TM3 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC25.51■■□□□ 1.67
DDX53Q86TM3 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC25.51■■□□□ 1.67
DDX53Q86TM3 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC25.51■■□□□ 1.67
DDX53Q86TM3 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
DDX53Q86TM3 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC25.5■■□□□ 1.67
DDX53Q86TM3 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
DDX53Q86TM3 SHF-208ENST00000560734 1731 ntTSL 3 BASIC25.5■■□□□ 1.67
DDX53Q86TM3 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC25.5■■□□□ 1.67
DDX53Q86TM3 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
DDX53Q86TM3 TSPY9P-201ENST00000440215 945 ntBASIC25.49■■□□□ 1.67
DDX53Q86TM3 TSPY11P-201ENST00000442607 1045 ntBASIC25.49■■□□□ 1.67
DDX53Q86TM3 AC092028.1-203ENST00000608262 953 ntBASIC25.49■■□□□ 1.67
DDX53Q86TM3 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
DDX53Q86TM3 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
DDX53Q86TM3 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
DDX53Q86TM3 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC25.48■■□□□ 1.67
DDX53Q86TM3 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC25.48■■□□□ 1.67
DDX53Q86TM3 PEMT-206ENST00000435340 960 ntTSL 5 BASIC25.48■■□□□ 1.67
DDX53Q86TM3 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
DDX53Q86TM3 MIR4281-201ENST00000580852 62 ntBASIC25.48■■□□□ 1.67
DDX53Q86TM3 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
DDX53Q86TM3 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
DDX53Q86TM3 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
DDX53Q86TM3 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
DDX53Q86TM3 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
DDX53Q86TM3 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
DDX53Q86TM3 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
DDX53Q86TM3 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC25.46■■□□□ 1.67
DDX53Q86TM3 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
DDX53Q86TM3 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
DDX53Q86TM3 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
DDX53Q86TM3 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
DDX53Q86TM3 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC25.45■■□□□ 1.67
DDX53Q86TM3 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
DDX53Q86TM3 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms