Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC29.04■■■□□ 2.24
Chd4Q6PDQ2 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC29.04■■■□□ 2.24
Chd4Q6PDQ2 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Chd4Q6PDQ2 Gm11847-201ENSMUST00000125165 1119 ntBASIC29.03■■■□□ 2.24
Chd4Q6PDQ2 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC29.03■■■□□ 2.24
Chd4Q6PDQ2 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC29.03■■■□□ 2.24
Chd4Q6PDQ2 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC29.03■■■□□ 2.24
Chd4Q6PDQ2 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC29.03■■■□□ 2.24
Chd4Q6PDQ2 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC29.03■■■□□ 2.24
Chd4Q6PDQ2 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC29.02■■■□□ 2.24
Chd4Q6PDQ2 Etf1-202ENSMUST00000180351 108 ntBASIC29.02■■■□□ 2.24
Chd4Q6PDQ2 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
Chd4Q6PDQ2 AC153890.1-201ENSMUST00000220021 2469 ntBASIC29.02■■■□□ 2.24
Chd4Q6PDQ2 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Chd4Q6PDQ2 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC29.02■■■□□ 2.24
Chd4Q6PDQ2 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC29.02■■■□□ 2.24
Chd4Q6PDQ2 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC29.01■■■□□ 2.23
Chd4Q6PDQ2 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
Chd4Q6PDQ2 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
Chd4Q6PDQ2 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Chd4Q6PDQ2 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC29■■■□□ 2.23
Chd4Q6PDQ2 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC29■■■□□ 2.23
Chd4Q6PDQ2 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Chd4Q6PDQ2 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC28.99■■■□□ 2.23
Chd4Q6PDQ2 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC28.99■■■□□ 2.23
Chd4Q6PDQ2 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC28.99■■■□□ 2.23
Chd4Q6PDQ2 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC28.99■■■□□ 2.23
Chd4Q6PDQ2 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC28.99■■■□□ 2.23
Chd4Q6PDQ2 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Chd4Q6PDQ2 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC28.98■■■□□ 2.23
Chd4Q6PDQ2 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC28.97■■■□□ 2.23
Chd4Q6PDQ2 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC28.97■■■□□ 2.23
Chd4Q6PDQ2 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC28.97■■■□□ 2.23
Chd4Q6PDQ2 Gm21956-201ENSMUST00000179946 522 ntBASIC28.97■■■□□ 2.23
Chd4Q6PDQ2 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC28.97■■■□□ 2.23
Chd4Q6PDQ2 Gm8093-201ENSMUST00000128935 1892 ntBASIC28.97■■■□□ 2.23
Chd4Q6PDQ2 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC28.97■■■□□ 2.23
Chd4Q6PDQ2 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC28.96■■■□□ 2.23
Chd4Q6PDQ2 Gm22238-201ENSMUST00000175222 88 ntBASIC28.96■■■□□ 2.23
Chd4Q6PDQ2 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
Chd4Q6PDQ2 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
Chd4Q6PDQ2 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
Chd4Q6PDQ2 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC28.95■■■□□ 2.23
Chd4Q6PDQ2 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC28.95■■■□□ 2.22
Chd4Q6PDQ2 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
Chd4Q6PDQ2 Gm10399-202ENSMUST00000202768 748 ntBASIC28.94■■■□□ 2.22
Chd4Q6PDQ2 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC28.94■■■□□ 2.22
Chd4Q6PDQ2 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC28.94■■■□□ 2.22
Chd4Q6PDQ2 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Chd4Q6PDQ2 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Chd4Q6PDQ2 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC28.93■■■□□ 2.22
Chd4Q6PDQ2 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC28.93■■■□□ 2.22
Chd4Q6PDQ2 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC28.92■■■□□ 2.22
Chd4Q6PDQ2 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
Chd4Q6PDQ2 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.92■■■□□ 2.22
Chd4Q6PDQ2 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
Chd4Q6PDQ2 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
Chd4Q6PDQ2 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
Chd4Q6PDQ2 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Chd4Q6PDQ2 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC28.91■■■□□ 2.22
Chd4Q6PDQ2 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
Chd4Q6PDQ2 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC28.9■■■□□ 2.22
Chd4Q6PDQ2 Gm6934-201ENSMUST00000194780 1905 ntBASIC28.9■■■□□ 2.22
Chd4Q6PDQ2 Gm7417-201ENSMUST00000192950 473 ntBASIC28.9■■■□□ 2.22
Chd4Q6PDQ2 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Chd4Q6PDQ2 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Chd4Q6PDQ2 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
Chd4Q6PDQ2 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
Chd4Q6PDQ2 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
Chd4Q6PDQ2 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC28.89■■■□□ 2.22
Chd4Q6PDQ2 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC28.89■■■□□ 2.21
Chd4Q6PDQ2 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC28.88■■■□□ 2.21
Chd4Q6PDQ2 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC28.88■■■□□ 2.21
Chd4Q6PDQ2 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
Chd4Q6PDQ2 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
Chd4Q6PDQ2 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC28.88■■■□□ 2.21
Chd4Q6PDQ2 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC28.88■■■□□ 2.21
Chd4Q6PDQ2 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC28.88■■■□□ 2.21
Chd4Q6PDQ2 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
Chd4Q6PDQ2 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC28.87■■■□□ 2.21
Chd4Q6PDQ2 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
Chd4Q6PDQ2 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Chd4Q6PDQ2 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Chd4Q6PDQ2 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Chd4Q6PDQ2 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
Chd4Q6PDQ2 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC28.85■■■□□ 2.21
Chd4Q6PDQ2 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC28.85■■■□□ 2.21
Chd4Q6PDQ2 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC28.84■■■□□ 2.21
Chd4Q6PDQ2 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC28.84■■■□□ 2.21
Chd4Q6PDQ2 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
Chd4Q6PDQ2 Gm40881-201ENSMUST00000223397 166 ntBASIC28.84■■■□□ 2.21
Chd4Q6PDQ2 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC28.83■■■□□ 2.21
Chd4Q6PDQ2 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC28.83■■■□□ 2.21
Chd4Q6PDQ2 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Chd4Q6PDQ2 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Chd4Q6PDQ2 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC28.82■■■□□ 2.2
Chd4Q6PDQ2 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
Chd4Q6PDQ2 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Chd4Q6PDQ2 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Chd4Q6PDQ2 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC28.82■■■□□ 2.2
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms