Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF404Q494X3 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.48■■□□□ 1.03
ZNF404Q494X3 MIR3648-2-201ENST00000581792 180 ntBASIC21.48■■□□□ 1.03
ZNF404Q494X3 MIR3648-1-201ENST00000615959 180 ntBASIC21.48■■□□□ 1.03
ZNF404Q494X3 CR559946.2-201ENST00000623684 991 ntBASIC21.48■■□□□ 1.03
ZNF404Q494X3 GDI1-215ENST00000630693 786 ntTSL 4 BASIC21.48■■□□□ 1.03
ZNF404Q494X3 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF404Q494X3 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF404Q494X3 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
ZNF404Q494X3 LINC01124-201ENST00000409786 2117 ntBASIC21.47■■□□□ 1.03
ZNF404Q494X3 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
ZNF404Q494X3 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
ZNF404Q494X3 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ZNF404Q494X3 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ZNF404Q494X3 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.47■■□□□ 1.03
ZNF404Q494X3 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
ZNF404Q494X3 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
ZNF404Q494X3 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.46■■□□□ 1.03
ZNF404Q494X3 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.46■■□□□ 1.03
ZNF404Q494X3 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
ZNF404Q494X3 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
ZNF404Q494X3 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ZNF404Q494X3 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ZNF404Q494X3 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
ZNF404Q494X3 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
ZNF404Q494X3 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
ZNF404Q494X3 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.45■■□□□ 1.02
ZNF404Q494X3 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
ZNF404Q494X3 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
ZNF404Q494X3 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
ZNF404Q494X3 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
ZNF404Q494X3 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
ZNF404Q494X3 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
ZNF404Q494X3 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
ZNF404Q494X3 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
ZNF404Q494X3 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
ZNF404Q494X3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
ZNF404Q494X3 HLA-V-202ENST00000446817 847 ntBASIC21.44■■□□□ 1.02
ZNF404Q494X3 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.44■■□□□ 1.02
ZNF404Q494X3 AC016575.1-201ENST00000607026 382 ntBASIC21.44■■□□□ 1.02
ZNF404Q494X3 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
ZNF404Q494X3 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
ZNF404Q494X3 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
ZNF404Q494X3 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.44■■□□□ 1.02
ZNF404Q494X3 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
ZNF404Q494X3 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ZNF404Q494X3 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ZNF404Q494X3 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
ZNF404Q494X3 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
ZNF404Q494X3 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
ZNF404Q494X3 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
ZNF404Q494X3 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
ZNF404Q494X3 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
ZNF404Q494X3 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
ZNF404Q494X3 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
ZNF404Q494X3 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.42■■□□□ 1.02
ZNF404Q494X3 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
ZNF404Q494X3 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.42■■□□□ 1.02
ZNF404Q494X3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
ZNF404Q494X3 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.41■■□□□ 1.02
ZNF404Q494X3 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
ZNF404Q494X3 HES6-205ENST00000409356 528 ntTSL 2 BASIC21.41■■□□□ 1.02
ZNF404Q494X3 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.41■■□□□ 1.02
ZNF404Q494X3 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.41■■□□□ 1.02
ZNF404Q494X3 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ZNF404Q494X3 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
ZNF404Q494X3 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
ZNF404Q494X3 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
ZNF404Q494X3 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
ZNF404Q494X3 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
ZNF404Q494X3 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.4■■□□□ 1.02
ZNF404Q494X3 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.4■■□□□ 1.02
ZNF404Q494X3 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ZNF404Q494X3 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
ZNF404Q494X3 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF404Q494X3 DUSP8P5-201ENST00000422884 1815 ntBASIC21.39■■□□□ 1.01
ZNF404Q494X3 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF404Q494X3 MIR639-201ENST00000384974 98 ntBASIC21.38■■□□□ 1.01
ZNF404Q494X3 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.38■■□□□ 1.01
ZNF404Q494X3 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.38■■□□□ 1.01
ZNF404Q494X3 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC21.38■■□□□ 1.01
ZNF404Q494X3 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF404Q494X3 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF404Q494X3 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF404Q494X3 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF404Q494X3 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF404Q494X3 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.37■■□□□ 1.01
ZNF404Q494X3 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF404Q494X3 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF404Q494X3 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.37■■□□□ 1.01
ZNF404Q494X3 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF404Q494X3 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF404Q494X3 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.37■■□□□ 1.01
ZNF404Q494X3 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF404Q494X3 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF404Q494X3 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF404Q494X3 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF404Q494X3 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.36■■□□□ 1.01
ZNF404Q494X3 AC096887.2-201ENST00000623443 1957 ntBASIC21.36■■□□□ 1.01
ZNF404Q494X3 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms