Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PRKDCP78527 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PRKDCP78527 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC17.78■□□□□ 0.44
PRKDCP78527 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PRKDCP78527 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PRKDCP78527 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC17.78■□□□□ 0.44
PRKDCP78527 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC17.78■□□□□ 0.44
PRKDCP78527 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC17.77■□□□□ 0.44
PRKDCP78527 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PRKDCP78527 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC17.76■□□□□ 0.43
PRKDCP78527 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PRKDCP78527 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PRKDCP78527 WHAMMP3-201ENST00000611636 1609 ntBASIC17.76■□□□□ 0.43
PRKDCP78527 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PRKDCP78527 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PRKDCP78527 ID1-201ENST00000376105 1233 ntBASIC17.76■□□□□ 0.43
PRKDCP78527 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC17.76■□□□□ 0.43
PRKDCP78527 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
PRKDCP78527 AF213884.3-201ENST00000563833 479 ntBASIC17.76■□□□□ 0.43
PRKDCP78527 IKBKGP1-201ENST00000612193 1073 ntBASIC17.76■□□□□ 0.43
PRKDCP78527 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PRKDCP78527 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC17.75■□□□□ 0.43
PRKDCP78527 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PRKDCP78527 AC092437.1-201ENST00000624794 1048 ntBASIC17.75■□□□□ 0.43
PRKDCP78527 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PRKDCP78527 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PRKDCP78527 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC17.74■□□□□ 0.43
PRKDCP78527 EDA-201ENST00000338901 1233 ntBASIC17.74■□□□□ 0.43
PRKDCP78527 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PRKDCP78527 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC17.74■□□□□ 0.43
PRKDCP78527 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PRKDCP78527 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
PRKDCP78527 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC17.74■□□□□ 0.43
PRKDCP78527 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
PRKDCP78527 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC17.74■□□□□ 0.43
PRKDCP78527 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PRKDCP78527 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC17.73■□□□□ 0.43
PRKDCP78527 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PRKDCP78527 AC022517.1-201ENST00000592429 346 ntBASIC17.73■□□□□ 0.43
PRKDCP78527 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC17.73■□□□□ 0.43
PRKDCP78527 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC17.72■□□□□ 0.43
PRKDCP78527 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC17.72■□□□□ 0.43
PRKDCP78527 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC17.72■□□□□ 0.43
PRKDCP78527 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC17.72■□□□□ 0.43
PRKDCP78527 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PRKDCP78527 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PRKDCP78527 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
PRKDCP78527 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PRKDCP78527 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC17.72■□□□□ 0.43
PRKDCP78527 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PRKDCP78527 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PRKDCP78527 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC17.72■□□□□ 0.43
PRKDCP78527 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PRKDCP78527 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PRKDCP78527 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PRKDCP78527 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC17.71■□□□□ 0.43
PRKDCP78527 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC17.71■□□□□ 0.43
PRKDCP78527 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
PRKDCP78527 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PRKDCP78527 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PRKDCP78527 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC17.71■□□□□ 0.43
PRKDCP78527 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PRKDCP78527 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
PRKDCP78527 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
PRKDCP78527 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PRKDCP78527 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PRKDCP78527 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC17.7■□□□□ 0.42
PRKDCP78527 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PRKDCP78527 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PRKDCP78527 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
PRKDCP78527 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC17.7■□□□□ 0.42
PRKDCP78527 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
PRKDCP78527 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC17.69■□□□□ 0.42
PRKDCP78527 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PRKDCP78527 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC17.68■□□□□ 0.42
PRKDCP78527 RBM38-205ENST00000440234 686 ntTSL 2 BASIC17.68■□□□□ 0.42
PRKDCP78527 AK3-203ENST00000447596 705 ntTSL 2 BASIC17.68■□□□□ 0.42
PRKDCP78527 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC17.68■□□□□ 0.42
PRKDCP78527 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PRKDCP78527 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC17.67■□□□□ 0.42
PRKDCP78527 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PRKDCP78527 TFPT-201ENST00000391757 774 ntTSL 5 BASIC17.67■□□□□ 0.42
PRKDCP78527 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PRKDCP78527 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
PRKDCP78527 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PRKDCP78527 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PRKDCP78527 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PRKDCP78527 EXOG-217ENST00000630638 197 ntTSL 5 BASIC17.67■□□□□ 0.42
PRKDCP78527 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC17.67■□□□□ 0.42
PRKDCP78527 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC17.67■□□□□ 0.42
PRKDCP78527 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKDCP78527 AC091305.1-201ENST00000479476 895 ntBASIC17.66■□□□□ 0.42
PRKDCP78527 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKDCP78527 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PRKDCP78527 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKDCP78527 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKDCP78527 AL136162.1-201ENST00000607711 1078 ntBASIC17.66■□□□□ 0.42
PRKDCP78527 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PRKDCP78527 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PRKDCP78527 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms