Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Hmgb1P63158 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
Hmgb1P63158 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Hmgb1P63158 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
Hmgb1P63158 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Hmgb1P63158 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Hmgb1P63158 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Hmgb1P63158 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Hmgb1P63158 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Hmgb1P63158 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC23.72■■□□□ 1.39
Hmgb1P63158 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
Hmgb1P63158 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Hmgb1P63158 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC23.71■■□□□ 1.39
Hmgb1P63158 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Hmgb1P63158 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
Hmgb1P63158 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Hmgb1P63158 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Hmgb1P63158 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
Hmgb1P63158 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Hmgb1P63158 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Hmgb1P63158 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Hmgb1P63158 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
Hmgb1P63158 Gm13042-201ENSMUST00000119244 1955 ntBASIC23.69■■□□□ 1.38
Hmgb1P63158 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Hmgb1P63158 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC23.68■■□□□ 1.38
Hmgb1P63158 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC23.68■■□□□ 1.38
Hmgb1P63158 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Hmgb1P63158 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
Hmgb1P63158 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Hmgb1P63158 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Hmgb1P63158 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Hmgb1P63158 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Hmgb1P63158 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC23.68■■□□□ 1.38
Hmgb1P63158 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC23.68■■□□□ 1.38
Hmgb1P63158 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC23.68■■□□□ 1.38
Hmgb1P63158 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC23.67■■□□□ 1.38
Hmgb1P63158 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
Hmgb1P63158 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Hmgb1P63158 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC23.67■■□□□ 1.38
Hmgb1P63158 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC23.67■■□□□ 1.38
Hmgb1P63158 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Hmgb1P63158 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC23.67■■□□□ 1.38
Hmgb1P63158 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Hmgb1P63158 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Hmgb1P63158 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC23.66■■□□□ 1.38
Hmgb1P63158 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC23.66■■□□□ 1.38
Hmgb1P63158 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Hmgb1P63158 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Hmgb1P63158 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Hmgb1P63158 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Hmgb1P63158 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Hmgb1P63158 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC23.66■■□□□ 1.38
Hmgb1P63158 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Hmgb1P63158 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Hmgb1P63158 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Hmgb1P63158 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Hmgb1P63158 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Hmgb1P63158 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Hmgb1P63158 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Hmgb1P63158 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Hmgb1P63158 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Hmgb1P63158 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Hmgb1P63158 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC23.64■■□□□ 1.37
Hmgb1P63158 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Hmgb1P63158 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Hmgb1P63158 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC23.63■■□□□ 1.37
Hmgb1P63158 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Hmgb1P63158 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Hmgb1P63158 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Hmgb1P63158 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Hmgb1P63158 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Hmgb1P63158 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
Hmgb1P63158 AC151971.4-201ENSMUST00000214717 704 ntBASIC23.62■■□□□ 1.37
Hmgb1P63158 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Hmgb1P63158 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Hmgb1P63158 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Hmgb1P63158 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Hmgb1P63158 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Hmgb1P63158 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Hmgb1P63158 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Hmgb1P63158 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Hmgb1P63158 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC23.61■■□□□ 1.37
Hmgb1P63158 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
Hmgb1P63158 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC23.61■■□□□ 1.37
Hmgb1P63158 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Hmgb1P63158 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Hmgb1P63158 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Hmgb1P63158 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Hmgb1P63158 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
Hmgb1P63158 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Hmgb1P63158 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Hmgb1P63158 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC23.59■■□□□ 1.37
Hmgb1P63158 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
Hmgb1P63158 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Hmgb1P63158 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
Hmgb1P63158 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC23.58■■□□□ 1.37
Hmgb1P63158 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Hmgb1P63158 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
Hmgb1P63158 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Hmgb1P63158 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 63.4 ms