Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC10.95□□□□□ -0.66
USH2AO75445 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC10.95□□□□□ -0.66
USH2AO75445 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
USH2AO75445 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC10.95□□□□□ -0.66
USH2AO75445 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC10.95□□□□□ -0.66
USH2AO75445 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
USH2AO75445 HLA-L-209ENST00000420110 1011 ntBASIC10.94□□□□□ -0.66
USH2AO75445 AC092437.1-201ENST00000624794 1048 ntBASIC10.94□□□□□ -0.66
USH2AO75445 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC10.94□□□□□ -0.66
USH2AO75445 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
USH2AO75445 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
USH2AO75445 WHAMMP3-201ENST00000611636 1609 ntBASIC10.94□□□□□ -0.66
USH2AO75445 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC10.94□□□□□ -0.66
USH2AO75445 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC10.94□□□□□ -0.66
USH2AO75445 AL136162.1-201ENST00000607711 1078 ntBASIC10.94□□□□□ -0.66
USH2AO75445 EXOG-217ENST00000630638 197 ntTSL 5 BASIC10.94□□□□□ -0.66
USH2AO75445 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
USH2AO75445 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
USH2AO75445 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
USH2AO75445 EDA-201ENST00000338901 1233 ntBASIC10.94□□□□□ -0.66
USH2AO75445 MIR4281-201ENST00000580852 62 ntBASIC10.94□□□□□ -0.66
USH2AO75445 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
USH2AO75445 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
USH2AO75445 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
USH2AO75445 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
USH2AO75445 AP001330.3-201ENST00000520123 633 ntBASIC10.93□□□□□ -0.66
USH2AO75445 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
USH2AO75445 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
USH2AO75445 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
USH2AO75445 AF213884.3-201ENST00000563833 479 ntBASIC10.93□□□□□ -0.66
USH2AO75445 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
USH2AO75445 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
USH2AO75445 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC10.93□□□□□ -0.66
USH2AO75445 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
USH2AO75445 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
USH2AO75445 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
USH2AO75445 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
USH2AO75445 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
USH2AO75445 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
USH2AO75445 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
USH2AO75445 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC10.92□□□□□ -0.66
USH2AO75445 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC10.92□□□□□ -0.66
USH2AO75445 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
USH2AO75445 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC10.91□□□□□ -0.66
USH2AO75445 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC10.91□□□□□ -0.66
USH2AO75445 MTDHP2-201ENST00000601468 714 ntBASIC10.91□□□□□ -0.66
USH2AO75445 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
USH2AO75445 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC10.91□□□□□ -0.66
USH2AO75445 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
USH2AO75445 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC10.91□□□□□ -0.66
USH2AO75445 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
USH2AO75445 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
USH2AO75445 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC10.91□□□□□ -0.66
USH2AO75445 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
USH2AO75445 RBM38-205ENST00000440234 686 ntTSL 2 BASIC10.91□□□□□ -0.66
USH2AO75445 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
USH2AO75445 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
USH2AO75445 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
USH2AO75445 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
USH2AO75445 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.66
USH2AO75445 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
USH2AO75445 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC10.9□□□□□ -0.66
USH2AO75445 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
USH2AO75445 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
USH2AO75445 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
USH2AO75445 ABHD17AP1-201ENST00000358206 933 ntBASIC10.89□□□□□ -0.67
USH2AO75445 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
USH2AO75445 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC10.89□□□□□ -0.67
USH2AO75445 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
USH2AO75445 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
USH2AO75445 DLX3-202ENST00000512495 834 ntTSL 2 BASIC10.89□□□□□ -0.67
USH2AO75445 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
USH2AO75445 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
USH2AO75445 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
USH2AO75445 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
USH2AO75445 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
USH2AO75445 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
USH2AO75445 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
USH2AO75445 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC10.88□□□□□ -0.67
USH2AO75445 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
USH2AO75445 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC10.88□□□□□ -0.67
USH2AO75445 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
USH2AO75445 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
USH2AO75445 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
USH2AO75445 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
USH2AO75445 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC10.88□□□□□ -0.67
USH2AO75445 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC10.88□□□□□ -0.67
USH2AO75445 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC10.88□□□□□ -0.67
USH2AO75445 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC10.88□□□□□ -0.67
USH2AO75445 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
USH2AO75445 RASA4CP-201ENST00000424092 1398 ntBASIC10.87□□□□□ -0.67
USH2AO75445 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC10.87□□□□□ -0.67
USH2AO75445 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
USH2AO75445 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
USH2AO75445 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
USH2AO75445 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
USH2AO75445 TFPT-201ENST00000391757 774 ntTSL 5 BASIC10.87□□□□□ -0.67
USH2AO75445 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
USH2AO75445 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC10.87□□□□□ -0.67
USH2AO75445 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms