Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 DOCK1-201ENST00000280333 6797 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.019e-7■■■□□ 18.5
CDC40O60508 COBLL1-204ENST00000409184 4636 ntAPPRIS ALT2 TSL 1 (best)8.61□□□□□ -1.039e-7■■■□□ 18.5
CDC40O60508 SUN1-219ENST00000452783 3717 ntTSL 2 BASIC8.6□□□□□ -1.039e-7■■■□□ 18.5
CDC40O60508 MACF1-224ENST00000496804 5065 ntTSL 58.43□□□□□ -1.069e-7■■■□□ 18.5
CDC40O60508 SUN1-203ENST00000401592 3953 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.069e-7■■■□□ 18.5
CDC40O60508 TNPO3-205ENST00000627585 4514 ntTSL 2 BASIC8.37□□□□□ -1.079e-7■■■□□ 18.5
CDC40O60508 TNPO3-203ENST00000471234 3283 ntTSL 1 (best) BASIC8.33□□□□□ -1.089e-7■■■□□ 18.5
CDC40O60508 COBLL1-221ENST00000493868 6332 ntTSL 1 (best)8.23□□□□□ -1.099e-7■■■□□ 18.5
CDC40O60508 DYNC1H1-203ENST00000554854 721 ntTSL 37.85□□□□□ -1.151e-9■■■□□ 18.5
CDC40O60508 TNPO3-201ENST00000265388 4153 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.189e-7■■■□□ 18.5
CDC40O60508 TNPO3-204ENST00000482320 3585 ntTSL 1 (best) BASIC7.29□□□□□ -1.249e-7■■■□□ 18.5
CDC40O60508 TMEM161B-AS1-201ENST00000496733 409 ntTSL 37.27□□□□□ -1.259e-7■■■□□ 18.5
CDC40O60508 MACF1-229ENST00000530262 6257 ntTSL 56.99□□□□□ -1.299e-7■■■□□ 18.5
CDC40O60508 HDLBP-226ENST00000453141 997 ntTSL 36.96□□□□□ -1.31e-9■■■□□ 18.5
CDC40O60508 COBLL1-214ENST00000460238 580 ntTSL 25.51□□□□□ -1.539e-7■■■□□ 18.5
CDC40O60508 MBNL3-208ENST00000436215 891 ntTSL 35.2□□□□□ -1.581e-9■■■□□ 18.5
CDC40O60508 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.56□□□□□ -1.689e-7■■■□□ 18.5
CDC40O60508 TMEM161B-AS1-211ENST00000512724 570 ntTSL 34.27□□□□□ -1.739e-7■■■□□ 18.5
CDC40O60508 SUN1-228ENST00000471349 569 ntTSL 42.58□□□□□ -29e-7■■■□□ 18.5
CDC40O60508 PEG3-203ENST00000594389 411 ntTSL 320.66■□□□□ 0.91e-11■■■□□ 18.5
CDC40O60508 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.651e-11■■■□□ 18.5
CDC40O60508 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.511e-11■■■□□ 18.5
CDC40O60508 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.481e-11■■■□□ 18.5
CDC40O60508 PEG3-204ENST00000594706 583 ntTSL 317.45■□□□□ 0.381e-11■■■□□ 18.5
CDC40O60508 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16■□□□□ 0.151e-11■■■□□ 18.5
CDC40O60508 PEG3-209ENST00000599577 5052 ntAPPRIS P1 TSL 1 (best)14.6□□□□□ -0.071e-11■■■□□ 18.5
CDC40O60508 PEG3-202ENST00000593695 4741 ntTSL 1 (best) BASIC11.68□□□□□ -0.541e-11■■■□□ 18.5
CDC40O60508 ZIM2-203ENST00000595671 2054 ntTSL 1 (best)11.5□□□□□ -0.571e-11■■■□□ 18.5
CDC40O60508 ZIM2-207ENST00000601070 1965 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.011e-11■■■□□ 18.5
CDC40O60508 PEG3-201ENST00000326441 8723 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.041e-11■■■□□ 18.5
CDC40O60508 ZIM2-205ENST00000597281 2037 ntTSL 1 (best)8.25□□□□□ -1.091e-11■■■□□ 18.5
CDC40O60508 PEG3-205ENST00000596261 570 ntTSL 47.57□□□□□ -1.21e-11■■■□□ 18.5
CDC40O60508 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.14■□□□□ 0.174e-6■■■□□ 18.4
CDC40O60508 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.214e-6■■■□□ 18.4
CDC40O60508 AXIN2-209ENST00000618960 4060 ntTSL 5 BASIC12.35□□□□□ -0.434e-6■■■□□ 18.4
CDC40O60508 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.96■■□□□ 1.115e-7■■■□□ 18.4
CDC40O60508 SH2B1-209ENST00000563674 719 ntTSL 321.27■■□□□ 15e-7■■■□□ 18.4
CDC40O60508 SH2B1-208ENST00000563591 588 ntTSL 220.79■□□□□ 0.925e-7■■■□□ 18.4
CDC40O60508 SH2B1-212ENST00000567536 484 ntTSL 320.58■□□□□ 0.895e-7■■■□□ 18.4
CDC40O60508 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.635e-7■■■□□ 18.4
CDC40O60508 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.55■□□□□ 0.085e-7■■■□□ 18.4
CDC40O60508 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.24■□□□□ 0.035e-7■■■□□ 18.4
CDC40O60508 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.96□□□□□ -0.015e-7■■■□□ 18.4
CDC40O60508 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.51□□□□□ -0.095e-7■■■□□ 18.4
CDC40O60508 SH2B1-211ENST00000566209 533 ntTSL 411.79□□□□□ -0.525e-7■■■□□ 18.4
CDC40O60508 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.38□□□□□ -0.114e-6■■■□□ 18.4
CDC40O60508 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.01□□□□□ -0.174e-6■■■□□ 18.4
CDC40O60508 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.234e-6■■■□□ 18.4
CDC40O60508 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.284e-6■■■□□ 18.4
CDC40O60508 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.414e-6■■■□□ 18.4
CDC40O60508 PRRC2C-204ENST00000426496 10175 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.652e-6■■■□□ 18.4
CDC40O60508 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC8.19□□□□□ -1.12e-6■■■□□ 18.4
CDC40O60508 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.282e-6■■■□□ 18.4
CDC40O60508 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.31■□□□□ 0.042e-8■■■□□ 18.4
CDC40O60508 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.012e-8■■■□□ 18.4
CDC40O60508 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.86□□□□□ -0.032e-8■■■□□ 18.4
CDC40O60508 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.84□□□□□ -0.032e-8■■■□□ 18.4
CDC40O60508 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.66□□□□□ -0.062e-8■■■□□ 18.4
CDC40O60508 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.61□□□□□ -0.072e-8■■■□□ 18.4
CDC40O60508 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.162e-8■■■□□ 18.4
CDC40O60508 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.66□□□□□ -0.222e-8■■■□□ 18.4
CDC40O60508 EIF4G1-222ENST00000442406 5129 ntTSL 1 (best)13.36□□□□□ -0.272e-8■■■□□ 18.4
CDC40O60508 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC13□□□□□ -0.332e-8■■■□□ 18.4
CDC40O60508 CMIP-203ENST00000539778 3937 ntTSL 1 (best) BASIC10.92□□□□□ -0.662e-6■■■□□ 18.3
CDC40O60508 XRCC5-202ENST00000392133 3761 ntAPPRIS P1 TSL 5 BASIC8.22□□□□□ -1.092e-7■■■□□ 18.2
CDC40O60508 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.442e-7■■■□□ 18.2
CDC40O60508 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.11■□□□□ 0.178e-7■■■□□ 18.2
CDC40O60508 SRRM2-225ENST00000576076 914 nt15.38■□□□□ 0.051e-9■■■□□ 18.1
CDC40O60508 SRRM2-212ENST00000572952 1118 ntTSL 212.37□□□□□ -0.431e-9■■■□□ 18.1
CDC40O60508 SRRM2-209ENST00000572278 711 ntTSL 28.96□□□□□ -0.981e-9■■■□□ 18.1
CDC40O60508 SRRM2-215ENST00000573498 994 ntTSL 35.47□□□□□ -1.531e-9■■■□□ 18.1
CDC40O60508 COLCA2-203ENST00000528846 823 ntTSL 318.3■□□□□ 0.524e-9■■■□□ 18.1
CDC40O60508 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.32■□□□□ 0.364e-9■■■□□ 18.1
CDC40O60508 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.25■□□□□ 0.354e-9■■■□□ 18.1
CDC40O60508 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.094e-9■■■□□ 18.1
CDC40O60508 HNRNPH1-231ENST00000519033 832 ntTSL 315.49■□□□□ 0.074e-9■■■□□ 18.1
CDC40O60508 HNRNPH1-240ENST00000521720 539 ntTSL 315.24■□□□□ 0.034e-9■■■□□ 18.1
CDC40O60508 COLCA2-207ENST00000639470 1207 ntTSL 1 (best)15.19■□□□□ 0.024e-9■■■□□ 18.1
CDC40O60508 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.024e-9■■■□□ 18.1
CDC40O60508 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.024e-9■■■□□ 18.1
CDC40O60508 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.97□□□□□ -0.174e-9■■■□□ 18.1
CDC40O60508 HNRNPH1-205ENST00000502632 1509 ntTSL 213.8□□□□□ -0.24e-9■■■□□ 18.1
CDC40O60508 GPT2-203ENST00000562132 554 ntTSL 413.69□□□□□ -0.224e-9■■■□□ 18.1
CDC40O60508 HNRNPH1-248ENST00000524179 598 ntTSL 213.59□□□□□ -0.234e-9■■■□□ 18.1
CDC40O60508 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.5□□□□□ -0.254e-9■■■□□ 18.1
CDC40O60508 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.254e-9■■■□□ 18.1
CDC40O60508 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC13.09□□□□□ -0.314e-9■■■□□ 18.1
CDC40O60508 TBCD-201ENST00000355528 7168 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.414e-9■■■□□ 18.1
CDC40O60508 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC12.29□□□□□ -0.444e-9■■■□□ 18.1
CDC40O60508 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC12.25□□□□□ -0.454e-9■■■□□ 18.1
CDC40O60508 HNRNPH1-246ENST00000523449 793 ntTSL 312.14□□□□□ -0.474e-9■■■□□ 18.1
CDC40O60508 ACIN1-213ENST00000555053 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.554e-9■■■□□ 18.1
CDC40O60508 ACIN1-222ENST00000557515 2751 ntTSL 5 BASIC11.45□□□□□ -0.584e-9■■■□□ 18.1
CDC40O60508 HNRNPH1-236ENST00000519958 885 ntTSL 511.15□□□□□ -0.624e-9■■■□□ 18.1
CDC40O60508 ACIN1-223ENST00000605057 4474 ntTSL 1 (best) BASIC10.78□□□□□ -0.684e-9■■■□□ 18.1
CDC40O60508 ACIN1-206ENST00000473758 3540 ntTSL 1 (best)10.36□□□□□ -0.754e-9■■■□□ 18.1
CDC40O60508 HNRNPH1-206ENST00000502904 2913 ntTSL 28.99□□□□□ -0.974e-9■■■□□ 18.1
CDC40O60508 HNRNPH1-227ENST00000515481 5564 ntTSL 25.53□□□□□ -1.524e-9■■■□□ 18.1
CDC40O60508 TNS3-208ENST00000457718 3836 ntTSL 510.09□□□□□ -0.798e-7■■■□□ 18.1
CDC40O60508 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC12.74□□□□□ -0.371e-10■■■□□ 18.1
Retrieved 100 of 5,364 protein–RNA pairs in 159.5 ms