Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.44■■□□□ 1.02
SSX4O60224 AC068473.5-201ENST00000616428 2072 ntBASIC21.44■■□□□ 1.02
SSX4O60224 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SSX4O60224 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SSX4O60224 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SSX4O60224 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SSX4O60224 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
SSX4O60224 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SSX4O60224 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SSX4O60224 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SSX4O60224 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SSX4O60224 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SSX4O60224 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SSX4O60224 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.42■■□□□ 1.02
SSX4O60224 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SSX4O60224 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SSX4O60224 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SSX4O60224 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
SSX4O60224 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SSX4O60224 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.42■■□□□ 1.02
SSX4O60224 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SSX4O60224 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SSX4O60224 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SSX4O60224 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SSX4O60224 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.41■■□□□ 1.02
SSX4O60224 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SSX4O60224 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SSX4O60224 AL139125.2-201ENST00000623134 1869 ntBASIC21.41■■□□□ 1.02
SSX4O60224 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.41■■□□□ 1.02
SSX4O60224 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SSX4O60224 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SSX4O60224 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SSX4O60224 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SSX4O60224 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
SSX4O60224 AP002414.2-202ENST00000590929 1450 ntBASIC21.39■■□□□ 1.02
SSX4O60224 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
SSX4O60224 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.02
SSX4O60224 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
SSX4O60224 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
SSX4O60224 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.39■■□□□ 1.01
SSX4O60224 U85056.1-201ENST00000616429 682 ntBASIC21.39■■□□□ 1.01
SSX4O60224 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
SSX4O60224 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SSX4O60224 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.38■■□□□ 1.01
SSX4O60224 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.38■■□□□ 1.01
SSX4O60224 AC126177.7-201ENST00000547904 679 ntBASIC21.38■■□□□ 1.01
SSX4O60224 AL033527.3-201ENST00000566366 1196 ntBASIC21.38■■□□□ 1.01
SSX4O60224 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SSX4O60224 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SSX4O60224 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SSX4O60224 AC079834.2-201ENST00000609776 1949 ntBASIC21.37■■□□□ 1.01
SSX4O60224 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
SSX4O60224 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SSX4O60224 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.37■■□□□ 1.01
SSX4O60224 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SSX4O60224 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SSX4O60224 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.37■■□□□ 1.01
SSX4O60224 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SSX4O60224 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
SSX4O60224 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SSX4O60224 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SSX4O60224 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SSX4O60224 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.36■■□□□ 1.01
SSX4O60224 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.36■■□□□ 1.01
SSX4O60224 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
SSX4O60224 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
SSX4O60224 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SSX4O60224 LINC00543-201ENST00000567234 1845 ntBASIC21.35■■□□□ 1.01
SSX4O60224 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SSX4O60224 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SSX4O60224 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.35■■□□□ 1.01
SSX4O60224 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SSX4O60224 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SSX4O60224 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SSX4O60224 AC142381.3-201ENST00000568208 1670 ntBASIC21.34■■□□□ 1.01
SSX4O60224 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SSX4O60224 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.34■■□□□ 1.01
SSX4O60224 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.34■■□□□ 1.01
SSX4O60224 AC092296.2-201ENST00000589470 999 ntBASIC21.34■■□□□ 1.01
SSX4O60224 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SSX4O60224 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SSX4O60224 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
SSX4O60224 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.33■■□□□ 1.01
SSX4O60224 AC018358.1-201ENST00000631079 1402 ntBASIC21.33■■□□□ 1.01
SSX4O60224 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.33■■□□□ 1.01
SSX4O60224 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
SSX4O60224 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SSX4O60224 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.33■■□□□ 1
SSX4O60224 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SSX4O60224 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SSX4O60224 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SSX4O60224 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SSX4O60224 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.32■■□□□ 1
SSX4O60224 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
SSX4O60224 ECEL1P2-201ENST00000461596 1295 ntBASIC21.32■■□□□ 1
SSX4O60224 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SSX4O60224 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SSX4O60224 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
SSX4O60224 AC138932.3-201ENST00000567634 1902 ntBASIC21.31■■□□□ 1
SSX4O60224 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms