Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smco4Q9JIS3 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Smco4Q9JIS3 Gm25262-201ENSMUST00000174934 133 ntBASIC17.56■□□□□ 0.4
Smco4Q9JIS3 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smco4Q9JIS3 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Smco4Q9JIS3 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smco4Q9JIS3 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smco4Q9JIS3 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smco4Q9JIS3 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smco4Q9JIS3 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smco4Q9JIS3 Gm37847-201ENSMUST00000192163 1497 ntBASIC17.55■□□□□ 0.4
Smco4Q9JIS3 Gm31748-201ENSMUST00000194938 1497 ntBASIC17.55■□□□□ 0.4
Smco4Q9JIS3 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC17.55■□□□□ 0.4
Smco4Q9JIS3 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Smco4Q9JIS3 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Smco4Q9JIS3 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smco4Q9JIS3 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Smco4Q9JIS3 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Smco4Q9JIS3 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smco4Q9JIS3 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smco4Q9JIS3 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Smco4Q9JIS3 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smco4Q9JIS3 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Smco4Q9JIS3 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smco4Q9JIS3 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Smco4Q9JIS3 Particl-201ENSMUST00000205370 1560 ntBASIC17.53■□□□□ 0.4
Smco4Q9JIS3 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smco4Q9JIS3 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Smco4Q9JIS3 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Smco4Q9JIS3 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smco4Q9JIS3 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smco4Q9JIS3 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Smco4Q9JIS3 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smco4Q9JIS3 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC17.52■□□□□ 0.4
Smco4Q9JIS3 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smco4Q9JIS3 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smco4Q9JIS3 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Smco4Q9JIS3 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Smco4Q9JIS3 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC17.51■□□□□ 0.39
Smco4Q9JIS3 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smco4Q9JIS3 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC17.51■□□□□ 0.39
Smco4Q9JIS3 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Smco4Q9JIS3 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Smco4Q9JIS3 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Smco4Q9JIS3 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Smco4Q9JIS3 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Smco4Q9JIS3 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Smco4Q9JIS3 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC17.49■□□□□ 0.39
Smco4Q9JIS3 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Smco4Q9JIS3 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Smco4Q9JIS3 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Smco4Q9JIS3 Gm8093-201ENSMUST00000128935 1892 ntBASIC17.49■□□□□ 0.39
Smco4Q9JIS3 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Smco4Q9JIS3 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Smco4Q9JIS3 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Smco4Q9JIS3 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Smco4Q9JIS3 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Smco4Q9JIS3 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Smco4Q9JIS3 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC17.47■□□□□ 0.39
Smco4Q9JIS3 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC17.47■□□□□ 0.39
Smco4Q9JIS3 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Smco4Q9JIS3 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Smco4Q9JIS3 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Smco4Q9JIS3 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Smco4Q9JIS3 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Smco4Q9JIS3 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC17.46■□□□□ 0.39
Smco4Q9JIS3 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Smco4Q9JIS3 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Smco4Q9JIS3 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Smco4Q9JIS3 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Smco4Q9JIS3 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Smco4Q9JIS3 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Smco4Q9JIS3 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Smco4Q9JIS3 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Smco4Q9JIS3 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
Smco4Q9JIS3 Peli2-204ENSMUST00000226513 1320 ntBASIC17.46■□□□□ 0.38
Smco4Q9JIS3 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Smco4Q9JIS3 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Smco4Q9JIS3 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Smco4Q9JIS3 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Smco4Q9JIS3 Gm9910-201ENSMUST00000195385 1550 ntBASIC17.45■□□□□ 0.38
Smco4Q9JIS3 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Smco4Q9JIS3 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Smco4Q9JIS3 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Smco4Q9JIS3 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Smco4Q9JIS3 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Smco4Q9JIS3 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Smco4Q9JIS3 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Smco4Q9JIS3 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Smco4Q9JIS3 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Smco4Q9JIS3 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Smco4Q9JIS3 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Smco4Q9JIS3 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Smco4Q9JIS3 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Smco4Q9JIS3 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
Smco4Q9JIS3 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Smco4Q9JIS3 Gm17082-201ENSMUST00000166043 1091 ntBASIC17.43■□□□□ 0.38
Smco4Q9JIS3 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Smco4Q9JIS3 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC17.43■□□□□ 0.38
Smco4Q9JIS3 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms