Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
TRIM39Q9HCM9 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM39Q9HCM9 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM39Q9HCM9 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM39Q9HCM9 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM39Q9HCM9 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM39Q9HCM9 AC135731.1-201ENST00000569415 2548 ntBASIC23.81■■□□□ 1.4
TRIM39Q9HCM9 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM39Q9HCM9 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM39Q9HCM9 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC23.81■■□□□ 1.4
TRIM39Q9HCM9 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM39Q9HCM9 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM39Q9HCM9 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC23.81■■□□□ 1.4
TRIM39Q9HCM9 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM39Q9HCM9 KRT18P10-201ENST00000388836 1287 ntBASIC23.8■■□□□ 1.4
TRIM39Q9HCM9 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC23.8■■□□□ 1.4
TRIM39Q9HCM9 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC23.8■■□□□ 1.4
TRIM39Q9HCM9 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM39Q9HCM9 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM39Q9HCM9 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM39Q9HCM9 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM39Q9HCM9 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
TRIM39Q9HCM9 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM39Q9HCM9 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
TRIM39Q9HCM9 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM39Q9HCM9 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRIM39Q9HCM9 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRIM39Q9HCM9 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRIM39Q9HCM9 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
TRIM39Q9HCM9 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRIM39Q9HCM9 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRIM39Q9HCM9 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRIM39Q9HCM9 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
TRIM39Q9HCM9 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC23.77■■□□□ 1.4
TRIM39Q9HCM9 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRIM39Q9HCM9 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.77■■□□□ 1.4
TRIM39Q9HCM9 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRIM39Q9HCM9 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRIM39Q9HCM9 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
TRIM39Q9HCM9 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.76■■□□□ 1.39
TRIM39Q9HCM9 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
TRIM39Q9HCM9 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.76■■□□□ 1.39
TRIM39Q9HCM9 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
TRIM39Q9HCM9 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
TRIM39Q9HCM9 HYI-210ENST00000486909 905 ntTSL 5 BASIC23.76■■□□□ 1.39
TRIM39Q9HCM9 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC23.76■■□□□ 1.39
TRIM39Q9HCM9 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.76■■□□□ 1.39
TRIM39Q9HCM9 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.76■■□□□ 1.39
TRIM39Q9HCM9 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
TRIM39Q9HCM9 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
TRIM39Q9HCM9 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
TRIM39Q9HCM9 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
TRIM39Q9HCM9 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
TRIM39Q9HCM9 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC23.75■■□□□ 1.39
TRIM39Q9HCM9 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC23.75■■□□□ 1.39
TRIM39Q9HCM9 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC23.75■■□□□ 1.39
TRIM39Q9HCM9 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC23.75■■□□□ 1.39
TRIM39Q9HCM9 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
TRIM39Q9HCM9 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TRIM39Q9HCM9 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TRIM39Q9HCM9 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC23.74■■□□□ 1.39
TRIM39Q9HCM9 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.74■■□□□ 1.39
TRIM39Q9HCM9 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.74■■□□□ 1.39
TRIM39Q9HCM9 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM39Q9HCM9 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM39Q9HCM9 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM39Q9HCM9 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM39Q9HCM9 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC23.73■■□□□ 1.39
TRIM39Q9HCM9 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM39Q9HCM9 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM39Q9HCM9 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.73■■□□□ 1.39
TRIM39Q9HCM9 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM39Q9HCM9 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
TRIM39Q9HCM9 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
TRIM39Q9HCM9 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC23.72■■□□□ 1.39
TRIM39Q9HCM9 RPS2P7-201ENST00000447334 885 ntBASIC23.72■■□□□ 1.39
TRIM39Q9HCM9 BHLHE23-202ENST00000612929 1109 ntBASIC23.72■■□□□ 1.39
TRIM39Q9HCM9 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM39Q9HCM9 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
TRIM39Q9HCM9 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
TRIM39Q9HCM9 AC092803.2-201ENST00000564287 1899 ntBASIC23.72■■□□□ 1.39
TRIM39Q9HCM9 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM39Q9HCM9 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
TRIM39Q9HCM9 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.71■■□□□ 1.39
TRIM39Q9HCM9 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM39Q9HCM9 AC139795.1-202ENST00000500444 432 ntBASIC23.71■■□□□ 1.39
TRIM39Q9HCM9 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM39Q9HCM9 AC087393.1-201ENST00000582896 145 ntBASIC23.71■■□□□ 1.39
TRIM39Q9HCM9 AC074183.2-201ENST00000623112 922 ntBASIC23.71■■□□□ 1.39
TRIM39Q9HCM9 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRIM39Q9HCM9 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.39
TRIM39Q9HCM9 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
TRIM39Q9HCM9 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
TRIM39Q9HCM9 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.7■■□□□ 1.38
TRIM39Q9HCM9 ERN1-208ENST00000606895 2068 ntBASIC23.69■■□□□ 1.38
TRIM39Q9HCM9 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM39Q9HCM9 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM39Q9HCM9 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC23.69■■□□□ 1.38
TRIM39Q9HCM9 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
TRIM39Q9HCM9 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms