Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
NKX2-4Q9H2Z4 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.06■■□□□ 1.76
NKX2-4Q9H2Z4 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
NKX2-4Q9H2Z4 RARRES2P6-201ENST00000567333 442 ntBASIC26.06■■□□□ 1.76
NKX2-4Q9H2Z4 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
NKX2-4Q9H2Z4 AC010997.5-201ENST00000609182 354 ntBASIC26.06■■□□□ 1.76
NKX2-4Q9H2Z4 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC26.06■■□□□ 1.76
NKX2-4Q9H2Z4 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC26.06■■□□□ 1.76
NKX2-4Q9H2Z4 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
NKX2-4Q9H2Z4 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
NKX2-4Q9H2Z4 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
NKX2-4Q9H2Z4 KRT18P10-201ENST00000388836 1287 ntBASIC26.04■■□□□ 1.76
NKX2-4Q9H2Z4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC26.04■■□□□ 1.76
NKX2-4Q9H2Z4 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC26.04■■□□□ 1.76
NKX2-4Q9H2Z4 MIR4466-201ENST00000606121 54 ntBASIC26.04■■□□□ 1.76
NKX2-4Q9H2Z4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
NKX2-4Q9H2Z4 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
NKX2-4Q9H2Z4 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
NKX2-4Q9H2Z4 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
NKX2-4Q9H2Z4 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
NKX2-4Q9H2Z4 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC26.02■■□□□ 1.76
NKX2-4Q9H2Z4 ZNRF2P3-201ENST00000424200 374 ntBASIC26.02■■□□□ 1.76
NKX2-4Q9H2Z4 MIR6724-1-201ENST00000616420 92 ntBASIC26.02■■□□□ 1.76
NKX2-4Q9H2Z4 MIR6724-2-201ENST00000616483 92 ntBASIC26.02■■□□□ 1.76
NKX2-4Q9H2Z4 MIR6724-4-201ENST00000617390 92 ntBASIC26.02■■□□□ 1.76
NKX2-4Q9H2Z4 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
NKX2-4Q9H2Z4 MIR6724-3-201ENST00000622482 92 ntBASIC26.02■■□□□ 1.76
NKX2-4Q9H2Z4 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
NKX2-4Q9H2Z4 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
NKX2-4Q9H2Z4 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
NKX2-4Q9H2Z4 AC133561.4-201ENST00000566112 224 ntBASIC26.01■■□□□ 1.75
NKX2-4Q9H2Z4 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC26.01■■□□□ 1.75
NKX2-4Q9H2Z4 AL356740.2-201ENST00000601559 647 ntBASIC26.01■■□□□ 1.75
NKX2-4Q9H2Z4 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC26■■□□□ 1.75
NKX2-4Q9H2Z4 EBPL-204ENST00000378272 766 ntTSL 3 BASIC26■■□□□ 1.75
NKX2-4Q9H2Z4 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC26■■□□□ 1.75
NKX2-4Q9H2Z4 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
NKX2-4Q9H2Z4 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
NKX2-4Q9H2Z4 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC25.99■■□□□ 1.75
NKX2-4Q9H2Z4 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
NKX2-4Q9H2Z4 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC25.99■■□□□ 1.75
NKX2-4Q9H2Z4 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
NKX2-4Q9H2Z4 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
NKX2-4Q9H2Z4 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC25.98■■□□□ 1.75
NKX2-4Q9H2Z4 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC25.98■■□□□ 1.75
NKX2-4Q9H2Z4 MTDHP2-201ENST00000601468 714 ntBASIC25.98■■□□□ 1.75
NKX2-4Q9H2Z4 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC25.98■■□□□ 1.75
NKX2-4Q9H2Z4 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC25.97■■□□□ 1.75
NKX2-4Q9H2Z4 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
NKX2-4Q9H2Z4 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC25.97■■□□□ 1.75
NKX2-4Q9H2Z4 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
NKX2-4Q9H2Z4 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
NKX2-4Q9H2Z4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC25.97■■□□□ 1.75
NKX2-4Q9H2Z4 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25.96■■□□□ 1.75
NKX2-4Q9H2Z4 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
NKX2-4Q9H2Z4 LSM4-201ENST00000252816 986 ntTSL 2 BASIC25.96■■□□□ 1.75
NKX2-4Q9H2Z4 MIR4281-201ENST00000580852 62 ntBASIC25.96■■□□□ 1.75
NKX2-4Q9H2Z4 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC25.96■■□□□ 1.75
NKX2-4Q9H2Z4 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC25.96■■□□□ 1.75
NKX2-4Q9H2Z4 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
NKX2-4Q9H2Z4 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC25.96■■□□□ 1.75
NKX2-4Q9H2Z4 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
NKX2-4Q9H2Z4 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
NKX2-4Q9H2Z4 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
NKX2-4Q9H2Z4 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.95■■□□□ 1.74
NKX2-4Q9H2Z4 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC25.95■■□□□ 1.74
NKX2-4Q9H2Z4 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC25.95■■□□□ 1.74
NKX2-4Q9H2Z4 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC25.94■■□□□ 1.74
NKX2-4Q9H2Z4 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC25.94■■□□□ 1.74
NKX2-4Q9H2Z4 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC25.94■■□□□ 1.74
NKX2-4Q9H2Z4 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.94■■□□□ 1.74
NKX2-4Q9H2Z4 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
NKX2-4Q9H2Z4 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC25.93■■□□□ 1.74
NKX2-4Q9H2Z4 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC25.93■■□□□ 1.74
NKX2-4Q9H2Z4 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
NKX2-4Q9H2Z4 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
NKX2-4Q9H2Z4 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
NKX2-4Q9H2Z4 AC026271.2-201ENST00000428091 497 ntBASIC25.92■■□□□ 1.74
NKX2-4Q9H2Z4 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
NKX2-4Q9H2Z4 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC25.91■■□□□ 1.74
NKX2-4Q9H2Z4 QDPR-206ENST00000508623 601 ntTSL 3 BASIC25.91■■□□□ 1.74
NKX2-4Q9H2Z4 AL512631.2-201ENST00000604634 923 ntBASIC25.91■■□□□ 1.74
NKX2-4Q9H2Z4 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
NKX2-4Q9H2Z4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC25.91■■□□□ 1.74
NKX2-4Q9H2Z4 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
NKX2-4Q9H2Z4 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC25.9■■□□□ 1.74
NKX2-4Q9H2Z4 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
NKX2-4Q9H2Z4 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC25.9■■□□□ 1.74
NKX2-4Q9H2Z4 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC25.9■■□□□ 1.74
NKX2-4Q9H2Z4 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
NKX2-4Q9H2Z4 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
NKX2-4Q9H2Z4 AK3-203ENST00000447596 705 ntTSL 2 BASIC25.89■■□□□ 1.74
NKX2-4Q9H2Z4 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
NKX2-4Q9H2Z4 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC25.89■■□□□ 1.73
NKX2-4Q9H2Z4 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.88■■□□□ 1.73
NKX2-4Q9H2Z4 AC142381.2-201ENST00000566120 298 ntBASIC25.88■■□□□ 1.73
NKX2-4Q9H2Z4 AC104564.3-201ENST00000582367 638 ntBASIC25.88■■□□□ 1.73
NKX2-4Q9H2Z4 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC25.87■■□□□ 1.73
NKX2-4Q9H2Z4 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
NKX2-4Q9H2Z4 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms