Protein–RNA interactions for Protein: Q99958

FOXC2, Forkhead box protein C2, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC2Q99958 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXC2Q99958 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.43■□□□□ 0.86
FOXC2Q99958 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
FOXC2Q99958 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.43■□□□□ 0.86
FOXC2Q99958 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
FOXC2Q99958 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
FOXC2Q99958 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
FOXC2Q99958 AC120024.1-201ENST00000562672 995 ntBASIC20.42■□□□□ 0.86
FOXC2Q99958 RARRES2P6-201ENST00000567333 442 ntBASIC20.42■□□□□ 0.86
FOXC2Q99958 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
FOXC2Q99958 WHAMMP3-201ENST00000611636 1609 ntBASIC20.42■□□□□ 0.86
FOXC2Q99958 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
FOXC2Q99958 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.41■□□□□ 0.86
FOXC2Q99958 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
FOXC2Q99958 AL356740.2-201ENST00000601559 647 ntBASIC20.41■□□□□ 0.86
FOXC2Q99958 AC010997.5-201ENST00000609182 354 ntBASIC20.41■□□□□ 0.86
FOXC2Q99958 MIR6724-1-201ENST00000616420 92 ntBASIC20.41■□□□□ 0.86
FOXC2Q99958 MIR6724-2-201ENST00000616483 92 ntBASIC20.41■□□□□ 0.86
FOXC2Q99958 MIR6724-4-201ENST00000617390 92 ntBASIC20.41■□□□□ 0.86
FOXC2Q99958 MIR6724-3-201ENST00000622482 92 ntBASIC20.41■□□□□ 0.86
FOXC2Q99958 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
FOXC2Q99958 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
FOXC2Q99958 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
FOXC2Q99958 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.4■□□□□ 0.86
FOXC2Q99958 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.4■□□□□ 0.86
FOXC2Q99958 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.4■□□□□ 0.86
FOXC2Q99958 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
FOXC2Q99958 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC20.4■□□□□ 0.86
FOXC2Q99958 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.4■□□□□ 0.86
FOXC2Q99958 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.4■□□□□ 0.86
FOXC2Q99958 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
FOXC2Q99958 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
FOXC2Q99958 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
FOXC2Q99958 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
FOXC2Q99958 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
FOXC2Q99958 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
FOXC2Q99958 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
FOXC2Q99958 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.39■□□□□ 0.85
FOXC2Q99958 ST7-AS1-201ENST00000456775 1889 ntBASIC20.39■□□□□ 0.85
FOXC2Q99958 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.39■□□□□ 0.85
FOXC2Q99958 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.38■□□□□ 0.85
FOXC2Q99958 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.38■□□□□ 0.85
FOXC2Q99958 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
FOXC2Q99958 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.38■□□□□ 0.85
FOXC2Q99958 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
FOXC2Q99958 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC20.38■□□□□ 0.85
FOXC2Q99958 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
FOXC2Q99958 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
FOXC2Q99958 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXC2Q99958 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXC2Q99958 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.37■□□□□ 0.85
FOXC2Q99958 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXC2Q99958 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXC2Q99958 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
FOXC2Q99958 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
FOXC2Q99958 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
FOXC2Q99958 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.36■□□□□ 0.85
FOXC2Q99958 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.36■□□□□ 0.85
FOXC2Q99958 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
FOXC2Q99958 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
FOXC2Q99958 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXC2Q99958 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
FOXC2Q99958 AC104564.3-201ENST00000582367 638 ntBASIC20.35■□□□□ 0.85
FOXC2Q99958 MTDHP2-201ENST00000601468 714 ntBASIC20.35■□□□□ 0.85
FOXC2Q99958 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
FOXC2Q99958 ZNRF2P3-201ENST00000424200 374 ntBASIC20.34■□□□□ 0.85
FOXC2Q99958 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
FOXC2Q99958 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.34■□□□□ 0.85
FOXC2Q99958 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.34■□□□□ 0.85
FOXC2Q99958 MIR4466-201ENST00000606121 54 ntBASIC20.34■□□□□ 0.85
FOXC2Q99958 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
FOXC2Q99958 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.34■□□□□ 0.85
FOXC2Q99958 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXC2Q99958 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
FOXC2Q99958 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.33■□□□□ 0.85
FOXC2Q99958 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
FOXC2Q99958 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
FOXC2Q99958 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
FOXC2Q99958 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
FOXC2Q99958 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
FOXC2Q99958 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.32■□□□□ 0.84
FOXC2Q99958 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
FOXC2Q99958 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXC2Q99958 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
FOXC2Q99958 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.31■□□□□ 0.84
FOXC2Q99958 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
FOXC2Q99958 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.31■□□□□ 0.84
FOXC2Q99958 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.31■□□□□ 0.84
FOXC2Q99958 ABCB10P3-201ENST00000561950 2166 ntBASIC20.31■□□□□ 0.84
FOXC2Q99958 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
FOXC2Q99958 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
FOXC2Q99958 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
FOXC2Q99958 AC026271.2-201ENST00000428091 497 ntBASIC20.3■□□□□ 0.84
FOXC2Q99958 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.3■□□□□ 0.84
FOXC2Q99958 MIR5787-201ENST00000611784 55 ntBASIC20.3■□□□□ 0.84
FOXC2Q99958 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.3■□□□□ 0.84
FOXC2Q99958 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
FOXC2Q99958 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
FOXC2Q99958 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.29■□□□□ 0.84
FOXC2Q99958 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms