Protein–RNA interactions for Protein: Q96D70

R3HDM4, R3H domain-containing protein 4, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM4Q96D70 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
R3HDM4Q96D70 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
R3HDM4Q96D70 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
R3HDM4Q96D70 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
R3HDM4Q96D70 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
R3HDM4Q96D70 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
R3HDM4Q96D70 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
R3HDM4Q96D70 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
R3HDM4Q96D70 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC19.72■□□□□ 0.75
R3HDM4Q96D70 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
R3HDM4Q96D70 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
R3HDM4Q96D70 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
R3HDM4Q96D70 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
R3HDM4Q96D70 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.71■□□□□ 0.75
R3HDM4Q96D70 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
R3HDM4Q96D70 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.71■□□□□ 0.75
R3HDM4Q96D70 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
R3HDM4Q96D70 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
R3HDM4Q96D70 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
R3HDM4Q96D70 MIR219A2-201ENST00000608502 1504 ntBASIC19.71■□□□□ 0.75
R3HDM4Q96D70 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
R3HDM4Q96D70 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
R3HDM4Q96D70 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC19.7■□□□□ 0.74
R3HDM4Q96D70 NTF6A-201ENST00000591175 560 ntBASIC19.7■□□□□ 0.74
R3HDM4Q96D70 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
R3HDM4Q96D70 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
R3HDM4Q96D70 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
R3HDM4Q96D70 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
R3HDM4Q96D70 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.69■□□□□ 0.74
R3HDM4Q96D70 AC148477.6-201ENST00000623746 465 ntBASIC19.69■□□□□ 0.74
R3HDM4Q96D70 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
R3HDM4Q96D70 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
R3HDM4Q96D70 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
R3HDM4Q96D70 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
R3HDM4Q96D70 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
R3HDM4Q96D70 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.68■□□□□ 0.74
R3HDM4Q96D70 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
R3HDM4Q96D70 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
R3HDM4Q96D70 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
R3HDM4Q96D70 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
R3HDM4Q96D70 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
R3HDM4Q96D70 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
R3HDM4Q96D70 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
R3HDM4Q96D70 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
R3HDM4Q96D70 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
R3HDM4Q96D70 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
R3HDM4Q96D70 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
R3HDM4Q96D70 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.66■□□□□ 0.74
R3HDM4Q96D70 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
R3HDM4Q96D70 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
R3HDM4Q96D70 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
R3HDM4Q96D70 AC012354.3-201ENST00000623734 483 ntBASIC19.66■□□□□ 0.74
R3HDM4Q96D70 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
R3HDM4Q96D70 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
R3HDM4Q96D70 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
R3HDM4Q96D70 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
R3HDM4Q96D70 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
R3HDM4Q96D70 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
R3HDM4Q96D70 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC19.65■□□□□ 0.74
R3HDM4Q96D70 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
R3HDM4Q96D70 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
R3HDM4Q96D70 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.65■□□□□ 0.74
R3HDM4Q96D70 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
R3HDM4Q96D70 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC19.64■□□□□ 0.73
R3HDM4Q96D70 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
R3HDM4Q96D70 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
R3HDM4Q96D70 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.63■□□□□ 0.73
R3HDM4Q96D70 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.63■□□□□ 0.73
R3HDM4Q96D70 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
R3HDM4Q96D70 AC060814.1-201ENST00000554326 538 ntBASIC19.63■□□□□ 0.73
R3HDM4Q96D70 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
R3HDM4Q96D70 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
R3HDM4Q96D70 AL359258.2-201ENST00000564063 1566 ntBASIC19.62■□□□□ 0.73
R3HDM4Q96D70 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
R3HDM4Q96D70 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.62■□□□□ 0.73
R3HDM4Q96D70 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
R3HDM4Q96D70 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
R3HDM4Q96D70 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
R3HDM4Q96D70 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
R3HDM4Q96D70 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.62■□□□□ 0.73
R3HDM4Q96D70 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
R3HDM4Q96D70 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
R3HDM4Q96D70 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
R3HDM4Q96D70 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
R3HDM4Q96D70 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
R3HDM4Q96D70 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
R3HDM4Q96D70 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
R3HDM4Q96D70 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC19.61■□□□□ 0.73
R3HDM4Q96D70 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
R3HDM4Q96D70 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
R3HDM4Q96D70 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
R3HDM4Q96D70 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
R3HDM4Q96D70 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
R3HDM4Q96D70 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
R3HDM4Q96D70 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
R3HDM4Q96D70 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
R3HDM4Q96D70 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC19.59■□□□□ 0.73
R3HDM4Q96D70 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
R3HDM4Q96D70 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
R3HDM4Q96D70 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms