Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
SHROOM3Q8TF72 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC24.65■■□□□ 1.54
SHROOM3Q8TF72 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
SHROOM3Q8TF72 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
SHROOM3Q8TF72 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
SHROOM3Q8TF72 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
SHROOM3Q8TF72 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
SHROOM3Q8TF72 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC24.65■■□□□ 1.54
SHROOM3Q8TF72 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
SHROOM3Q8TF72 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC24.64■■□□□ 1.54
SHROOM3Q8TF72 KRT18P60-201ENST00000312876 1297 ntBASIC24.64■■□□□ 1.54
SHROOM3Q8TF72 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
SHROOM3Q8TF72 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
SHROOM3Q8TF72 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
SHROOM3Q8TF72 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
SHROOM3Q8TF72 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC24.63■■□□□ 1.53
SHROOM3Q8TF72 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
SHROOM3Q8TF72 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC24.63■■□□□ 1.53
SHROOM3Q8TF72 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC24.62■■□□□ 1.53
SHROOM3Q8TF72 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC24.62■■□□□ 1.53
SHROOM3Q8TF72 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SHROOM3Q8TF72 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC24.62■■□□□ 1.53
SHROOM3Q8TF72 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
SHROOM3Q8TF72 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
SHROOM3Q8TF72 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SHROOM3Q8TF72 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC24.61■■□□□ 1.53
SHROOM3Q8TF72 AC009831.1-201ENST00000580420 1582 ntBASIC24.61■■□□□ 1.53
SHROOM3Q8TF72 GFER-205ENST00000569451 517 ntTSL 5 BASIC24.61■■□□□ 1.53
SHROOM3Q8TF72 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SHROOM3Q8TF72 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
SHROOM3Q8TF72 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC24.61■■□□□ 1.53
SHROOM3Q8TF72 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SHROOM3Q8TF72 AC020928.2-201ENST00000588717 2197 ntBASIC24.61■■□□□ 1.53
SHROOM3Q8TF72 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
SHROOM3Q8TF72 AL592293.1-201ENST00000502889 1188 ntBASIC24.6■■□□□ 1.53
SHROOM3Q8TF72 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
SHROOM3Q8TF72 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
SHROOM3Q8TF72 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
SHROOM3Q8TF72 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SHROOM3Q8TF72 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
SHROOM3Q8TF72 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
SHROOM3Q8TF72 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC24.59■■□□□ 1.53
SHROOM3Q8TF72 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SHROOM3Q8TF72 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC24.58■■□□□ 1.53
SHROOM3Q8TF72 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.53
SHROOM3Q8TF72 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
SHROOM3Q8TF72 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
SHROOM3Q8TF72 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
SHROOM3Q8TF72 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SHROOM3Q8TF72 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
SHROOM3Q8TF72 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC24.57■■□□□ 1.52
SHROOM3Q8TF72 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SHROOM3Q8TF72 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
SHROOM3Q8TF72 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
SHROOM3Q8TF72 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC24.55■■□□□ 1.52
SHROOM3Q8TF72 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SHROOM3Q8TF72 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SHROOM3Q8TF72 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SHROOM3Q8TF72 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC24.54■■□□□ 1.52
SHROOM3Q8TF72 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SHROOM3Q8TF72 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
SHROOM3Q8TF72 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
SHROOM3Q8TF72 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SHROOM3Q8TF72 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SHROOM3Q8TF72 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
SHROOM3Q8TF72 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
SHROOM3Q8TF72 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
SHROOM3Q8TF72 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC24.53■■□□□ 1.52
SHROOM3Q8TF72 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
SHROOM3Q8TF72 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SHROOM3Q8TF72 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
SHROOM3Q8TF72 SPCS2P3-201ENST00000500401 656 ntBASIC24.53■■□□□ 1.52
SHROOM3Q8TF72 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC24.53■■□□□ 1.52
SHROOM3Q8TF72 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
SHROOM3Q8TF72 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
SHROOM3Q8TF72 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
SHROOM3Q8TF72 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SHROOM3Q8TF72 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC24.53■■□□□ 1.52
SHROOM3Q8TF72 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC24.53■■□□□ 1.52
SHROOM3Q8TF72 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SHROOM3Q8TF72 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
SHROOM3Q8TF72 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC24.52■■□□□ 1.52
SHROOM3Q8TF72 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SHROOM3Q8TF72 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SHROOM3Q8TF72 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
SHROOM3Q8TF72 AC097639.1-201ENST00000565519 1891 ntBASIC24.51■■□□□ 1.51
SHROOM3Q8TF72 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
SHROOM3Q8TF72 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
SHROOM3Q8TF72 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
SHROOM3Q8TF72 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
SHROOM3Q8TF72 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC24.5■■□□□ 1.51
SHROOM3Q8TF72 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC24.5■■□□□ 1.51
SHROOM3Q8TF72 CEBPA-AS1-201ENST00000592982 2198 ntBASIC24.5■■□□□ 1.51
SHROOM3Q8TF72 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SHROOM3Q8TF72 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SHROOM3Q8TF72 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SHROOM3Q8TF72 DUX4L9-201ENST00000449051 1259 ntBASIC24.49■■□□□ 1.51
SHROOM3Q8TF72 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SHROOM3Q8TF72 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
SHROOM3Q8TF72 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms