Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
Clrn3Q8BHH8 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Clrn3Q8BHH8 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Clrn3Q8BHH8 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Clrn3Q8BHH8 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Clrn3Q8BHH8 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Clrn3Q8BHH8 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Clrn3Q8BHH8 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Clrn3Q8BHH8 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Clrn3Q8BHH8 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Clrn3Q8BHH8 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Clrn3Q8BHH8 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC20.3■□□□□ 0.84
Clrn3Q8BHH8 Gm28731-201ENSMUST00000185564 1569 ntBASIC20.29■□□□□ 0.84
Clrn3Q8BHH8 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clrn3Q8BHH8 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
Clrn3Q8BHH8 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clrn3Q8BHH8 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clrn3Q8BHH8 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clrn3Q8BHH8 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Clrn3Q8BHH8 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Clrn3Q8BHH8 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Clrn3Q8BHH8 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Clrn3Q8BHH8 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Clrn3Q8BHH8 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Clrn3Q8BHH8 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Clrn3Q8BHH8 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC20.27■□□□□ 0.84
Clrn3Q8BHH8 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Clrn3Q8BHH8 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Clrn3Q8BHH8 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Clrn3Q8BHH8 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Clrn3Q8BHH8 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
Clrn3Q8BHH8 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Clrn3Q8BHH8 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Clrn3Q8BHH8 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Clrn3Q8BHH8 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Clrn3Q8BHH8 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Clrn3Q8BHH8 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Clrn3Q8BHH8 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.25■□□□□ 0.83
Clrn3Q8BHH8 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Clrn3Q8BHH8 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Clrn3Q8BHH8 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Clrn3Q8BHH8 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Clrn3Q8BHH8 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Clrn3Q8BHH8 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC20.24■□□□□ 0.83
Clrn3Q8BHH8 Gm14523-201ENSMUST00000117260 558 ntBASIC20.24■□□□□ 0.83
Clrn3Q8BHH8 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.24■□□□□ 0.83
Clrn3Q8BHH8 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Clrn3Q8BHH8 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Clrn3Q8BHH8 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Clrn3Q8BHH8 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Clrn3Q8BHH8 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Clrn3Q8BHH8 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Clrn3Q8BHH8 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Clrn3Q8BHH8 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Clrn3Q8BHH8 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Clrn3Q8BHH8 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Clrn3Q8BHH8 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Clrn3Q8BHH8 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Clrn3Q8BHH8 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.22■□□□□ 0.83
Clrn3Q8BHH8 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Clrn3Q8BHH8 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Clrn3Q8BHH8 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Clrn3Q8BHH8 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Clrn3Q8BHH8 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Clrn3Q8BHH8 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Clrn3Q8BHH8 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.21■□□□□ 0.83
Clrn3Q8BHH8 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Clrn3Q8BHH8 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Clrn3Q8BHH8 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Clrn3Q8BHH8 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.21■□□□□ 0.83
Clrn3Q8BHH8 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC20.21■□□□□ 0.83
Clrn3Q8BHH8 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Clrn3Q8BHH8 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Clrn3Q8BHH8 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Clrn3Q8BHH8 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Clrn3Q8BHH8 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Clrn3Q8BHH8 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.2■□□□□ 0.82
Clrn3Q8BHH8 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Clrn3Q8BHH8 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Clrn3Q8BHH8 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.2■□□□□ 0.82
Clrn3Q8BHH8 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Clrn3Q8BHH8 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
Clrn3Q8BHH8 AC153524.1-201ENSMUST00000220436 1935 ntBASIC20.19■□□□□ 0.82
Clrn3Q8BHH8 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Clrn3Q8BHH8 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Clrn3Q8BHH8 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Clrn3Q8BHH8 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Clrn3Q8BHH8 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.19■□□□□ 0.82
Clrn3Q8BHH8 Gm7332-201ENSMUST00000118351 454 ntBASIC20.19■□□□□ 0.82
Clrn3Q8BHH8 Gm12366-201ENSMUST00000121722 873 ntBASIC20.19■□□□□ 0.82
Clrn3Q8BHH8 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.19■□□□□ 0.82
Clrn3Q8BHH8 Gm27502-201ENSMUST00000183495 199 ntBASIC20.19■□□□□ 0.82
Clrn3Q8BHH8 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.19■□□□□ 0.82
Clrn3Q8BHH8 Gm5786-201ENSMUST00000085368 882 ntBASIC20.19■□□□□ 0.82
Clrn3Q8BHH8 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Clrn3Q8BHH8 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clrn3Q8BHH8 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clrn3Q8BHH8 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clrn3Q8BHH8 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Clrn3Q8BHH8 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 281.7 ms