Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 AC122317.2-201ENSMUST00000218708 1248 ntBASIC19.69■□□□□ 0.74
Cdh11P55288 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC19.69■□□□□ 0.74
Cdh11P55288 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cdh11P55288 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cdh11P55288 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdh11P55288 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC19.68■□□□□ 0.74
Cdh11P55288 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cdh11P55288 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdh11P55288 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdh11P55288 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cdh11P55288 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdh11P55288 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
Cdh11P55288 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cdh11P55288 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdh11P55288 Gm9812-201ENSMUST00000061934 968 ntBASIC19.67■□□□□ 0.74
Cdh11P55288 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC19.67■□□□□ 0.74
Cdh11P55288 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdh11P55288 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Cdh11P55288 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdh11P55288 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdh11P55288 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cdh11P55288 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cdh11P55288 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Cdh11P55288 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cdh11P55288 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC19.66■□□□□ 0.74
Cdh11P55288 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cdh11P55288 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC19.65■□□□□ 0.74
Cdh11P55288 Gm12366-201ENSMUST00000121722 873 ntBASIC19.65■□□□□ 0.74
Cdh11P55288 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC19.65■□□□□ 0.74
Cdh11P55288 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Cdh11P55288 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Cdh11P55288 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cdh11P55288 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC19.65■□□□□ 0.74
Cdh11P55288 Gm5786-201ENSMUST00000085368 882 ntBASIC19.65■□□□□ 0.74
Cdh11P55288 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cdh11P55288 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cdh11P55288 Gm9910-201ENSMUST00000195385 1550 ntBASIC19.65■□□□□ 0.74
Cdh11P55288 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Cdh11P55288 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC19.64■□□□□ 0.74
Cdh11P55288 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cdh11P55288 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdh11P55288 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Cdh11P55288 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC19.64■□□□□ 0.73
Cdh11P55288 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cdh11P55288 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdh11P55288 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdh11P55288 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC19.63■□□□□ 0.73
Cdh11P55288 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cdh11P55288 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cdh11P55288 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cdh11P55288 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cdh11P55288 Gm27502-201ENSMUST00000183495 199 ntBASIC19.63■□□□□ 0.73
Cdh11P55288 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cdh11P55288 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cdh11P55288 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Cdh11P55288 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cdh11P55288 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cdh11P55288 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cdh11P55288 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cdh11P55288 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cdh11P55288 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cdh11P55288 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Cdh11P55288 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cdh11P55288 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC19.61■□□□□ 0.73
Cdh11P55288 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cdh11P55288 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cdh11P55288 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cdh11P55288 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cdh11P55288 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Cdh11P55288 AC153911.1-201ENSMUST00000220378 758 ntBASIC19.61■□□□□ 0.73
Cdh11P55288 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cdh11P55288 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Cdh11P55288 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cdh11P55288 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Cdh11P55288 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cdh11P55288 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cdh11P55288 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cdh11P55288 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Cdh11P55288 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cdh11P55288 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cdh11P55288 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cdh11P55288 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC19.6■□□□□ 0.73
Cdh11P55288 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC19.6■□□□□ 0.73
Cdh11P55288 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cdh11P55288 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cdh11P55288 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cdh11P55288 Gm38160-201ENSMUST00000193090 2499 ntBASIC19.59■□□□□ 0.73
Cdh11P55288 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cdh11P55288 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC19.59■□□□□ 0.73
Cdh11P55288 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Cdh11P55288 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
Cdh11P55288 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Cdh11P55288 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC19.58■□□□□ 0.73
Cdh11P55288 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Cdh11P55288 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Cdh11P55288 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Cdh11P55288 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Cdh11P55288 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Cdh11P55288 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cdh11P55288 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 80.3 ms