Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
VIMP08670 AC096887.2-201ENST00000623443 1957 ntBASIC23.99■■□□□ 1.43
VIMP08670 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
VIMP08670 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC23.99■■□□□ 1.43
VIMP08670 AC097639.1-201ENST00000565519 1891 ntBASIC23.98■■□□□ 1.43
VIMP08670 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
VIMP08670 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
VIMP08670 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
VIMP08670 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC23.98■■□□□ 1.43
VIMP08670 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC23.98■■□□□ 1.43
VIMP08670 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC23.97■■□□□ 1.43
VIMP08670 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
VIMP08670 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.97■■□□□ 1.43
VIMP08670 AC108673.1-201ENST00000510422 1159 ntBASIC23.97■■□□□ 1.43
VIMP08670 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC23.97■■□□□ 1.43
VIMP08670 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC23.96■■□□□ 1.43
VIMP08670 AC079834.2-201ENST00000609776 1949 ntBASIC23.96■■□□□ 1.43
VIMP08670 EED-207ENST00000528180 1745 ntTSL 5 BASIC23.96■■□□□ 1.43
VIMP08670 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
VIMP08670 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
VIMP08670 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.95■■□□□ 1.43
VIMP08670 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.43
VIMP08670 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC23.95■■□□□ 1.42
VIMP08670 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
VIMP08670 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
VIMP08670 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VIMP08670 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.42
VIMP08670 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.95■■□□□ 1.42
VIMP08670 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VIMP08670 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VIMP08670 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
VIMP08670 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.95■■□□□ 1.42
VIMP08670 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
VIMP08670 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
VIMP08670 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VIMP08670 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
VIMP08670 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
VIMP08670 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
VIMP08670 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
VIMP08670 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.93■■□□□ 1.42
VIMP08670 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
VIMP08670 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC23.93■■□□□ 1.42
VIMP08670 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
VIMP08670 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
VIMP08670 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.92■■□□□ 1.42
VIMP08670 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
VIMP08670 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
VIMP08670 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC23.92■■□□□ 1.42
VIMP08670 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
VIMP08670 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
VIMP08670 AC110285.7-201ENST00000624417 1536 ntBASIC23.92■■□□□ 1.42
VIMP08670 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
VIMP08670 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
VIMP08670 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.92■■□□□ 1.42
VIMP08670 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
VIMP08670 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC23.92■■□□□ 1.42
VIMP08670 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
VIMP08670 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
VIMP08670 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.91■■□□□ 1.42
VIMP08670 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
VIMP08670 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.91■■□□□ 1.42
VIMP08670 MIR6090-201ENST00000622481 60 ntBASIC23.91■■□□□ 1.42
VIMP08670 CHML-205ENST00000638160 705 ntTSL 3 BASIC23.91■■□□□ 1.42
VIMP08670 AP003733.4-201ENST00000623785 1697 ntBASIC23.91■■□□□ 1.42
VIMP08670 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.91■■□□□ 1.42
VIMP08670 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.9■■□□□ 1.42
VIMP08670 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
VIMP08670 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VIMP08670 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.9■■□□□ 1.42
VIMP08670 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
VIMP08670 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VIMP08670 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VIMP08670 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.89■■□□□ 1.42
VIMP08670 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
VIMP08670 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
VIMP08670 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
VIMP08670 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
VIMP08670 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
VIMP08670 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.88■■□□□ 1.41
VIMP08670 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VIMP08670 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
VIMP08670 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
VIMP08670 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.88■■□□□ 1.41
VIMP08670 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.87■■□□□ 1.41
VIMP08670 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.87■■□□□ 1.41
VIMP08670 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
VIMP08670 LINC00543-201ENST00000567234 1845 ntBASIC23.87■■□□□ 1.41
VIMP08670 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
VIMP08670 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC23.87■■□□□ 1.41
VIMP08670 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.87■■□□□ 1.41
VIMP08670 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC23.87■■□□□ 1.41
VIMP08670 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
VIMP08670 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.86■■□□□ 1.41
VIMP08670 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
VIMP08670 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.86■■□□□ 1.41
VIMP08670 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VIMP08670 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
VIMP08670 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
VIMP08670 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
VIMP08670 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.85■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms