Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Cldn1O88551 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Cldn1O88551 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Cldn1O88551 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Cldn1O88551 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cldn1O88551 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cldn1O88551 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Cldn1O88551 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cldn1O88551 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cldn1O88551 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Cldn1O88551 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cldn1O88551 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC18.56■□□□□ 0.56
Cldn1O88551 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC18.56■□□□□ 0.56
Cldn1O88551 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC18.56■□□□□ 0.56
Cldn1O88551 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Cldn1O88551 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cldn1O88551 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Cldn1O88551 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Cldn1O88551 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Cldn1O88551 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Cldn1O88551 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC18.55■□□□□ 0.56
Cldn1O88551 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cldn1O88551 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cldn1O88551 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cldn1O88551 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cldn1O88551 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cldn1O88551 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cldn1O88551 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.54■□□□□ 0.56
Cldn1O88551 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Cldn1O88551 Gm9847-201ENSMUST00000052528 599 ntBASIC18.54■□□□□ 0.56
Cldn1O88551 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cldn1O88551 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cldn1O88551 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cldn1O88551 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cldn1O88551 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Cldn1O88551 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Cldn1O88551 Gm5297-201ENSMUST00000198555 1171 ntBASIC18.53■□□□□ 0.56
Cldn1O88551 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Cldn1O88551 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cldn1O88551 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cldn1O88551 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC18.52■□□□□ 0.56
Cldn1O88551 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Cldn1O88551 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Cldn1O88551 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cldn1O88551 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Cldn1O88551 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cldn1O88551 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Cldn1O88551 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cldn1O88551 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Cldn1O88551 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC18.51■□□□□ 0.55
Cldn1O88551 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cldn1O88551 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cldn1O88551 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Cldn1O88551 Gm20634-201ENSMUST00000090779 2956 ntBASIC18.51■□□□□ 0.55
Cldn1O88551 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cldn1O88551 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cldn1O88551 Gm16464-201ENSMUST00000117815 1095 ntBASIC18.5■□□□□ 0.55
Cldn1O88551 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Cldn1O88551 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Cldn1O88551 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cldn1O88551 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cldn1O88551 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC18.5■□□□□ 0.55
Cldn1O88551 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cldn1O88551 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cldn1O88551 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC18.49■□□□□ 0.55
Cldn1O88551 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Cldn1O88551 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cldn1O88551 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cldn1O88551 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cldn1O88551 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cldn1O88551 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cldn1O88551 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cldn1O88551 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cldn1O88551 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cldn1O88551 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cldn1O88551 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
Cldn1O88551 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cldn1O88551 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cldn1O88551 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cldn1O88551 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cldn1O88551 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Cldn1O88551 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Cldn1O88551 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cldn1O88551 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC18.47■□□□□ 0.55
Cldn1O88551 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Cldn1O88551 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC18.47■□□□□ 0.55
Cldn1O88551 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC18.47■□□□□ 0.55
Cldn1O88551 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC18.47■□□□□ 0.55
Cldn1O88551 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Cldn1O88551 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC18.47■□□□□ 0.55
Cldn1O88551 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Cldn1O88551 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Cldn1O88551 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC18.46■□□□□ 0.55
Cldn1O88551 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
Cldn1O88551 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cldn1O88551 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cldn1O88551 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC18.46■□□□□ 0.55
Cldn1O88551 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Cldn1O88551 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Cldn1O88551 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 110.4 ms