Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC12.72□□□□□ -0.372e-8■■■□□ 19.2
CDC40O60508 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC12.36□□□□□ -0.432e-8■■■□□ 19.2
CDC40O60508 EIF4G1-221ENST00000441154 4311 ntTSL 5 BASIC9.65□□□□□ -0.862e-8■■■□□ 19.2
CDC40O60508 HUWE1-204ENST00000426907 4805 ntTSL 59.19□□□□□ -0.943e-6■■■□□ 19.2
CDC40O60508 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.32■□□□□ 0.681e-6■■■□□ 19
CDC40O60508 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.24■□□□□ 0.351e-6■■■□□ 19
CDC40O60508 BX890604.1-204ENST00000475317 696 ntTSL 214.33□□□□□ -0.121e-6■■■□□ 19
CDC40O60508 SLC12A7-204ENST00000513223 1066 ntTSL 514.29□□□□□ -0.121e-6■■■□□ 19
CDC40O60508 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.21e-6■■■□□ 19
CDC40O60508 SLC12A7-206ENST00000634447 3142 ntTSL 512.51□□□□□ -0.411e-6■■■□□ 19
CDC40O60508 BX890604.1-206ENST00000471090 922 ntTSL 3 BASIC7.27□□□□□ -1.251e-6■■■□□ 19
CDC40O60508 BX890604.1-203ENST00000483854 711 ntTSL 1 (best)6.65□□□□□ -1.341e-6■■■□□ 19
CDC40O60508 BX890604.1-202ENST00000469903 426 ntTSL 22.18□□□□□ -2.061e-6■■■□□ 19
CDC40O60508 ZFPM1-202ENST00000562417 497 ntTSL 316.03■□□□□ 0.163e-6■■■□□ 18.9
CDC40O60508 LSS-206ENST00000464357 1041 ntTSL 519.16■□□□□ 0.668e-7■■■□□ 18.9
CDC40O60508 LSS-204ENST00000450351 853 ntTSL 516.62■□□□□ 0.258e-7■■■□□ 18.9
CDC40O60508 EPS8L2-212ENST00000528770 2233 ntTSL 216.31■□□□□ 0.24e-7■■■□□ 18.9
CDC40O60508 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.154e-7■■■□□ 18.9
CDC40O60508 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.094e-7■■■□□ 18.9
CDC40O60508 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.14e-7■■■□□ 18.9
CDC40O60508 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.144e-7■■■□□ 18.9
CDC40O60508 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.174e-7■■■□□ 18.9
CDC40O60508 EPS8L2-208ENST00000526909 3844 ntTSL 511.22□□□□□ -0.614e-7■■■□□ 18.9
CDC40O60508 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.083e-6■■■□□ 18.9
CDC40O60508 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.13e-6■■■□□ 18.9
CDC40O60508 CHD4-211ENST00000544484 6554 ntTSL 2 BASIC12.26□□□□□ -0.453e-6■■■□□ 18.9
CDC40O60508 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.44e-7■■■□□ 18.7
CDC40O60508 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.44e-7■■■□□ 18.7
CDC40O60508 TNS1-220ENST00000611415 6509 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.554e-7■■■□□ 18.7
CDC40O60508 TNS1-221ENST00000615025 6488 ntTSL 5 BASIC10.82□□□□□ -0.684e-7■■■□□ 18.7
CDC40O60508 AGRN-205ENST00000469403 899 ntTSL 323.98■■□□□ 1.432e-6■■■□□ 18.6
CDC40O60508 AGRN-206ENST00000477585 707 ntTSL 322.29■■□□□ 1.162e-6■■■□□ 18.6
CDC40O60508 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.152e-6■■■□□ 18.6
CDC40O60508 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.69□□□□□ -0.222e-6■■■□□ 18.6
CDC40O60508 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.549e-7■■■□□ 18.5
CDC40O60508 SURF1-203ENST00000463965 493 ntTSL 324.01■■□□□ 1.439e-7■■■□□ 18.5
CDC40O60508 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.27■■□□□ 1.329e-7■■■□□ 18.5
CDC40O60508 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.329e-7■■■□□ 18.5
CDC40O60508 PANK2-202ENST00000336066 1843 ntTSL 1 (best)22.65■■□□□ 1.229e-7■■■□□ 18.5
CDC40O60508 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.869e-7■■■□□ 18.5
CDC40O60508 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.56■□□□□ 0.721e-9■■■□□ 18.5
CDC40O60508 ACTB-211ENST00000480301 657 ntTSL 1 (best)19.21■□□□□ 0.679e-7■■■□□ 18.5
CDC40O60508 ACTB-212ENST00000484841 1032 ntTSL 518.79■□□□□ 0.69e-7■■■□□ 18.5
CDC40O60508 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.27■□□□□ 0.529e-7■■■□□ 18.5
CDC40O60508 ACTB-210ENST00000477812 820 ntTSL 218.08■□□□□ 0.489e-7■■■□□ 18.5
CDC40O60508 SURF1-202ENST00000437995 813 ntTSL 517.94■□□□□ 0.469e-7■■■□□ 18.5
CDC40O60508 PANK2-205ENST00000495692 967 ntTSL 317.74■□□□□ 0.439e-7■■■□□ 18.5
CDC40O60508 TMEM161B-AS1-203ENST00000501869 684 ntTSL 1 (best)17.1■□□□□ 0.339e-7■■■□□ 18.5
CDC40O60508 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.319e-7■■■□□ 18.5
CDC40O60508 COBLL1-219ENST00000491126 604 ntTSL 416.75■□□□□ 0.279e-7■■■□□ 18.5
CDC40O60508 MACF1-227ENST00000524432 4338 ntTSL 516.36■□□□□ 0.219e-7■■■□□ 18.5
CDC40O60508 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.29e-7■■■□□ 18.5
CDC40O60508 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.089e-7■■■□□ 18.5
CDC40O60508 ACTB-207ENST00000462494 2245 ntTSL 515.29■□□□□ 0.049e-7■■■□□ 18.5
CDC40O60508 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.15■□□□□ 0.029e-7■■■□□ 18.5
CDC40O60508 COBLL1-212ENST00000456171 1793 ntTSL 215.12■□□□□ 0.019e-7■■■□□ 18.5
CDC40O60508 ACTB-205ENST00000432588 568 ntTSL 415.08■□□□□ 09e-7■■■□□ 18.5
CDC40O60508 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15□□□□□ -0.019e-7■■■□□ 18.5
CDC40O60508 TMEM161B-AS1-205ENST00000504769 548 ntTSL 415□□□□□ -0.019e-7■■■□□ 18.5
CDC40O60508 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.019e-7■■■□□ 18.5
CDC40O60508 SUN1-226ENST00000467483 992 ntTSL 214.82□□□□□ -0.049e-7■■■□□ 18.5
CDC40O60508 SUN1-207ENST00000419312 473 ntTSL 414.75□□□□□ -0.059e-7■■■□□ 18.5
CDC40O60508 ACTB-202ENST00000414620 561 ntTSL 414.47□□□□□ -0.099e-7■■■□□ 18.5
CDC40O60508 ACTB-206ENST00000443528 569 ntTSL 414.4□□□□□ -0.19e-7■■■□□ 18.5
CDC40O60508 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.38□□□□□ -0.119e-7■■■□□ 18.5
CDC40O60508 TMEM161B-AS1-206ENST00000504922 585 ntTSL 214.17□□□□□ -0.149e-7■■■□□ 18.5
CDC40O60508 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.04□□□□□ -0.169e-7■■■□□ 18.5
CDC40O60508 ACTB-204ENST00000425660 1845 ntTSL 1 (best)13.86□□□□□ -0.199e-7■■■□□ 18.5
CDC40O60508 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.219e-7■■■□□ 18.5
CDC40O60508 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.239e-7■■■□□ 18.5
CDC40O60508 SEMA4G-209ENST00000519649 2024 ntTSL 513.59□□□□□ -0.239e-7■■■□□ 18.5
CDC40O60508 HDLBP-247ENST00000498595 595 ntTSL 513.49□□□□□ -0.251e-9■■■□□ 18.5
CDC40O60508 SUN1-218ENST00000450881 513 ntTSL 413.39□□□□□ -0.279e-7■■■□□ 18.5
CDC40O60508 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.289e-7■■■□□ 18.5
CDC40O60508 TMEM161B-AS1-210ENST00000510087 590 ntTSL 313.27□□□□□ -0.299e-7■■■□□ 18.5
CDC40O60508 SUN1-201ENST00000340926 2128 ntTSL 512.78□□□□□ -0.369e-7■■■□□ 18.5
CDC40O60508 TCOF1-215ENST00000515516 661 ntTSL 512.7□□□□□ -0.389e-7■■■□□ 18.5
CDC40O60508 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.439e-7■■■□□ 18.5
CDC40O60508 TCOF1-213ENST00000514442 5195 ntTSL 212.35□□□□□ -0.439e-7■■■□□ 18.5
CDC40O60508 COBLL1-202ENST00000375458 9367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.479e-7■■■□□ 18.5
CDC40O60508 TCOF1-205ENST00000439160 4644 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.559e-7■■■□□ 18.5
CDC40O60508 PANK2-206ENST00000497424 4815 ntTSL 2 BASIC11.62□□□□□ -0.559e-7■■■□□ 18.5
CDC40O60508 E2F3-203ENST00000613242 4094 ntTSL 5 BASIC11.5□□□□□ -0.579e-7■■■□□ 18.5
CDC40O60508 SUN1-234ENST00000493681 526 ntTSL 311.48□□□□□ -0.579e-7■■■□□ 18.5
CDC40O60508 HDLBP-231ENST00000467435 639 ntTSL 211.21□□□□□ -0.611e-9■■■□□ 18.5
CDC40O60508 SUN1-214ENST00000435699 676 ntTSL 311.03□□□□□ -0.649e-7■■■□□ 18.5
CDC40O60508 SUN1-206ENST00000413171 4488 ntTSL 510.81□□□□□ -0.689e-7■■■□□ 18.5
CDC40O60508 TCOF1-211ENST00000513346 4646 ntAPPRIS ALT2 TSL 5 BASIC10.59□□□□□ -0.719e-7■■■□□ 18.5
CDC40O60508 HDLBP-236ENST00000477477 340 ntTSL 510.58□□□□□ -0.721e-9■■■□□ 18.5
CDC40O60508 ACTB-209ENST00000473257 556 ntTSL 310.5□□□□□ -0.739e-7■■■□□ 18.5
CDC40O60508 PANK2-203ENST00000464452 771 ntTSL 310.47□□□□□ -0.739e-7■■■□□ 18.5
CDC40O60508 TCOF1-204ENST00000427724 4272 ntAPPRIS ALT2 TSL 510.27□□□□□ -0.779e-7■■■□□ 18.5
CDC40O60508 SUN1-230ENST00000477950 575 ntTSL 310.15□□□□□ -0.789e-7■■■□□ 18.5
CDC40O60508 SUN1-212ENST00000429178 3701 ntTSL 1 (best)9.87□□□□□ -0.839e-7■■■□□ 18.5
CDC40O60508 TMEM161B-AS1-207ENST00000506584 717 ntTSL 3 BASIC9.52□□□□□ -0.899e-7■■■□□ 18.5
CDC40O60508 SUN1-202ENST00000389574 3812 ntAPPRIS P3 TSL 2 BASIC9.35□□□□□ -0.919e-7■■■□□ 18.5
CDC40O60508 DOCK1-206ENST00000623213 5761 ntTSL 1 (best) BASIC9.1□□□□□ -0.959e-7■■■□□ 18.5
CDC40O60508 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.989e-7■■■□□ 18.5
CDC40O60508 SUN1-205ENST00000405266 4062 ntTSL 5 BASIC8.9□□□□□ -0.989e-7■■■□□ 18.5
CDC40O60508 SUN1-210ENST00000425407 3868 ntAPPRIS P3 TSL 5 BASIC8.8□□□□□ -19e-7■■■□□ 18.5
Retrieved 100 of 5,364 protein–RNA pairs in 107.7 ms